Gene detail

Detail information of GWHGAAZE017376

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97977.1	4.5715E-155	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	2E-34	Transcription factor MYB1R1
trEMBL	tr\|A0A068TPK6\|A0A068TPK6_COFCA	2E-155	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97977.1}
TAIR10	AT3G16350.1	8E-66	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5317355	5320348	-
GWHAAZE00000005	mRNA	5317355	5320348	-
GWHAAZE00000005	exon	5320048	5320348	-
GWHAAZE00000005	exon	5318182	5318396	-
GWHAAZE00000005	exon	5317355	5317900	-
GWHAAZE00000005	CDS	5320048	5320348	-
GWHAAZE00000005	CDS	5318182	5318396	-
GWHAAZE00000005	CDS	5317355	5317900	-

Transcript Sequence
>GWHTAAZE017396 ATGACTCGGCGTTGCTCTCATTGTAGCAACAATGGCCACAACTCTCGCACGTGCCCTTCACGAGGAGGCGGCGGTGTTAGGTTGTTTGGGGTTAAACTCACCGACGGTTCGATCATGAAGAAGAGTGCGAGTATGGGTAACCTCTCTGCTCACTACCATTCCTCCTCATCCGCCGCCGCTTCACCTAATCCCGGTTCTCCCTTATCCGACCATCATCCCGTTCACCTGCCCGACGGTTACCTCTCCGACGATCCTGCTCACGCTTCTTGTTCCGCCAATCGACGCGCCGAACGCAAGAAAGGTGTTCCGTGGACAGAAGAGGAGCATCGGTTGTTCCTACTTGGTCTCCAGAAATTGGGAAAAGGAGACTGGCGTGGCATATCACGCAATTACGTTGTAACAAGGACTCCAACCCAAGTTGCAAGTCATGCCCAGAAGTACTTTATCCGACAAACAAATGCTACTCGAAAAAAACGACGGTCCAGTCTTTTTGACATGGTTTCAGATACGGACATGGTCACTGAACAACAATCAATGCACGAAGAACAATTCATGCTCCCTCCTCCTTCCGAATCAGTAAATACCGATAAAATGAATCCTCAGCCTTCTTTAAGCCTCTCTCTAAAGCCGGATTATGAGACCATGGAAACTACTCTAAGCAAAACATTTGAAGAAACCAAAGAGACAACAGCATCCTCGAGCGAAACTCCTCTGTTGATTCCCTCATTCTTCCCGGCTTATCTCCCAGTCCCATATCAGCTGTGGCCATCAAATGTGTGCTGCCCCCTAGAAGAAGATAAAGGAGCGGATAAATCTCATCATCAGGTCCTAAAGCCGATTCCAATATTCCGTAAAGAACCCGTAAATGTAGATGAACTGGTGGGCATGTCTCAGTTGAGTTTAGGAGAGACCGAAACAGGCCATATGGAGCCTCCACAGCTCTCACTAAATTTACCAGGTGAACCGTCTAGGCAGTCGGCTTTTCATGCAAGTACTCCAGCCAGTGGTTCAGGTACAAGTAAGGACAACAGCAGCAGTAGTAGTGTCATCCAAGCAGTTTGA

Network for GWHGAAZE017376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	103	147	3.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	112.114
	SRR3591706	second leaf	17.409
	SRR3591707	mature leaf	9.393
	SRR3591708	Shoot apex	82.584
	SRR3591709	Stem	41.291
	SRR3591710	White floral bud	8.100
	SRR3591711	White flower	12.126
	SRR3591712	Green floral bud	3.960
	SRR3591713	Yellow flower	10.145
SRP173429	SRR8316895	Juvenile bud stage	22.201
	SRR8316896	Juvenile bud stage	27.965
	SRR8316897	Juvenile bud stage	18.915
	SRR8316894	Third green stage	3.957
	SRR8316900	Third green stage	5.145
	SRR8316901	Third green stage	7.731
	SRR8316898	Complete white stage	2.992
	SRR8316899	Complete white stage	16.248
	SRR8316903	Complete white stage	7.622
	SRR8316902	Silver flowering stage	2.879
	SRR8316904	Silver flowering stage	4.257
	SRR8316905	Silver flowering stage	2.540
	SRR8316906	Gold flowering stage	7.815
	SRR8316907	Gold flowering stage	7.999
	SRR8316908	Gold flowering stage	7.703
SRP132670	SRR6706286	Control	9.594
	SRR6706287	Light intensity 50%	4.944
	SRR6706288	Light intensity 20%	4.206
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.259
	CNS0095593	Slightly white alabastrum(diploid) 2	12.085
	CNS0095594	Slightly white alabastrum(diploid) 3	14.869
	CNS0095595	Whole white alabastrum(diploid) 2	13.526
	CNS0095596	Whole white alabastrum(diploid) 3	3.819
	CNS0095597	Whole white alabastrum(diploid) 4	7.135
	CNS0095598	Silvery flower (diploied) 1	81.517
	CNS0095599	Silvery flower (diploied) 2	93.409
	CNS0095600	Silvery flower (diploied) 3	31.372
	CNS0095601	Golden flower (diploid) 1	116.973
	CNS0095602	Golden flower (diploid) 2	83.576
	CNS0095603	Golden flower (diploid) 3	82.247
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.761
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.772
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.967
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.413
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.735
	CNS0095610	Silvery flower (tetraploid) 1	9.260
	CNS0095611	Silvery flower (tetraploid) 2	15.461
	CNS0095612	Silvery flower (tetraploid) 3	7.171
	CNS0095613	Golden flower (tetraploid) 1	10.017
	CNS0095614	Golden flower (tetraploid) 2	12.234
	CNS0095615	Golden flower (tetraploid) 3	40.870
CRA001975	CRR073297	Stem 1	35.804
	CRR073298	Stem 2	35.680
	CRR073299	Stem 3	44.673
	CRR073300	Leaf 1	12.569
	CRR073301	Leaf 2	25.995
	CRR073302	Leaf 3	10.131
	CRR073303	Juvenile bud 1	9.284
	CRR073304	Juvenile bud 2	7.540
	CRR073305	Juvenile bud 3	20.561
	CRR073306	Third green 1	2.660
	CRR073307	Third green 2	4.462
	CRR073308	Third green 3	3.914
	CRR073309	Second white 1	1.241
	CRR073310	Second white 2	2.233
	CRR073311	Second white 3	1.488
	CRR073312	Silver flowering 1	1.815
	CRR073313	Silver flowering 2	2.204
	CRR073314	Silver flowering 3	1.635
	CRR073315	Gold flowering 1	70.293
	CRR073316	Gold flowering 2	90.319
	CRR073317	Gold flowering 3	58.263
	CRR073318	Tawny withering 1	36.099
	CRR073319	Tawny withering 2	22.896
	CRR073320	Tawny withering 3	51.699