Gene detail

Detail information of GWHGAAZE017371

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283588.2	4.8486E-127	PREDICTED: auxin-responsive protein IAA26-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8LAL2\|IAA26_ARATH	1E-71	Auxin-responsive protein IAA26
trEMBL	tr\|F6HY95\|F6HY95_VITVI	1E-121	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR10	AT3G16500.1	4E-59	phytochrome-associated protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5250518	5253258	-
GWHAAZE00000005	mRNA	5250518	5253258	-
GWHAAZE00000005	exon	5250518	5250564	-
GWHAAZE00000005	exon	5250691	5250755	-
GWHAAZE00000005	exon	5250932	5251079	-
GWHAAZE00000005	exon	5251243	5251523	-
GWHAAZE00000005	exon	5252732	5253258	-
GWHAAZE00000005	CDS	5252732	5253258	-
GWHAAZE00000005	CDS	5251243	5251523	-
GWHAAZE00000005	CDS	5250932	5251079	-
GWHAAZE00000005	CDS	5250691	5250755	-
GWHAAZE00000005	CDS	5250518	5250564	-

Transcript Sequence
>GWHTAAZE017391 ATGGAAGAATACACTGATGAGGTGATGAGGCCTCAGTTGCTAGATTTGATACCGAAAGAGAGAGAATGGCTTGTTAAAAGAGATGACGGAGAAGTAGCAAGAAGCCATAAAGGAGCTTCAGAGGAAAAAAAGCTGGAGCTAAGGCTTGGCCCACCGGGTGAAGAAGATGATGATTGGACCATAAAATTAAATGGTACCAATAATAGCAATTATAGAGAAACAGTAACATCAGAAAGAAACTCTCTTCTCTCTCTTGGCTACTCGTCTAGAATAATAGCCCAAAACACAAACCCAAGCACTTGTGGCTCAAAGAGATGGTTCATTGACACAGTTGTTGACCCTAAAAGAATAGAAGAGGAGGAGGATACTTGGATCTTCAACAAGGGCTTGCCTGTTGCGGTGAAGGAATCATCGTCACAGACCTGTTGCACTAAGGTAGGGGTAGACTTGCACAGTGCAGAAAAGAATGGATTTTCACCTGCATCTGCATCGGCTAATAATAATACAGCTGTGACCCTGCAGAAAAGAGCTGCTCCTGGTCCAGTTGTAGGGTGGCCTCCTATTCGTTCATTTAGGAAGAATATCGCAAGCACCAGCTCTTCAAAACCTCCCCCTCCGCCTCAGCCGCAAGATGTGATCCCAAACCAGGTTGCTAGCCAAAAACAGGCCGAAAGTTGTCGAAAAGGTTTGTTTGTGAAGATCAATATGGATGGCGTTCCTATTGGGAGAAAAGTGGATCTTAAAGCCTGTGGTAGTTATGACAAGCTCTCCTCTTCTGTTGATGAACTCTTCAGAGGACTTCTTGCAGCGCAAAGGGATTGTTCAGGTGGTGGAATTAAGAACAAGCAAGAGGGGGAGAAAGCAATAACTGGTTTGTTGGATGGGAGCGGGGAATATACCCTTGTGTATGAGGATAATGAAGGAGATAGGATGCTTGTTGGGGATGTACCTTGGCACATGTTTGTATCTACGGTGAAGAGGCTGCGTGTATTGAAAAGCTCTGAAGTTTCCGCACTATTCAGTGGAAGTAAGCAAGAAAAGAAACCTCTTGATGTTGCATTGAAATGA

Network for GWHGAAZE017371

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.17	AUX_IAA	45	339	7.40E-71

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.597
	SRR3591706	second leaf	16.917
	SRR3591707	mature leaf	21.455
	SRR3591708	Shoot apex	62.747
	SRR3591709	Stem	269.663
	SRR3591710	White floral bud	44.075
	SRR3591711	White flower	132.623
	SRR3591712	Green floral bud	24.466
	SRR3591713	Yellow flower	181.082
SRP173429	SRR8316895	Juvenile bud stage	18.275
	SRR8316896	Juvenile bud stage	19.645
	SRR8316897	Juvenile bud stage	7.014
	SRR8316894	Third green stage	7.347
	SRR8316900	Third green stage	10.491
	SRR8316901	Third green stage	9.365
	SRR8316898	Complete white stage	2.689
	SRR8316899	Complete white stage	29.698
	SRR8316903	Complete white stage	11.619
	SRR8316902	Silver flowering stage	23.694
	SRR8316904	Silver flowering stage	21.145
	SRR8316905	Silver flowering stage	13.750
	SRR8316906	Gold flowering stage	69.665
	SRR8316907	Gold flowering stage	69.888
	SRR8316908	Gold flowering stage	71.416
SRP132670	SRR6706286	Control	10.606
	SRR6706287	Light intensity 50%	9.804
	SRR6706288	Light intensity 20%	9.688
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.559
	CNS0095593	Slightly white alabastrum(diploid) 2	21.207
	CNS0095594	Slightly white alabastrum(diploid) 3	19.399
	CNS0095595	Whole white alabastrum(diploid) 2	20.822
	CNS0095596	Whole white alabastrum(diploid) 3	7.758
	CNS0095597	Whole white alabastrum(diploid) 4	12.174
	CNS0095598	Silvery flower (diploied) 1	72.115
	CNS0095599	Silvery flower (diploied) 2	42.489
	CNS0095600	Silvery flower (diploied) 3	25.586
	CNS0095601	Golden flower (diploid) 1	52.053
	CNS0095602	Golden flower (diploid) 2	60.977
	CNS0095603	Golden flower (diploid) 3	59.578
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.140
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.224
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.740
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.183
	CNS0095610	Silvery flower (tetraploid) 1	63.480
	CNS0095611	Silvery flower (tetraploid) 2	52.289
	CNS0095612	Silvery flower (tetraploid) 3	26.589
	CNS0095613	Golden flower (tetraploid) 1	42.781
	CNS0095614	Golden flower (tetraploid) 2	73.452
	CNS0095615	Golden flower (tetraploid) 3	37.764
CRA001975	CRR073297	Stem 1	24.200
	CRR073298	Stem 2	18.131
	CRR073299	Stem 3	23.305
	CRR073300	Leaf 1	8.844
	CRR073301	Leaf 2	10.568
	CRR073302	Leaf 3	7.216
	CRR073303	Juvenile bud 1	6.011
	CRR073304	Juvenile bud 2	7.486
	CRR073305	Juvenile bud 3	9.142
	CRR073306	Third green 1	25.531
	CRR073307	Third green 2	15.495
	CRR073308	Third green 3	17.680
	CRR073309	Second white 1	51.600
	CRR073310	Second white 2	63.135
	CRR073311	Second white 3	61.635
	CRR073312	Silver flowering 1	77.069
	CRR073313	Silver flowering 2	65.537
	CRR073314	Silver flowering 3	57.108
	CRR073315	Gold flowering 1	6.180
	CRR073316	Gold flowering 2	9.329
	CRR073317	Gold flowering 3	6.253
	CRR073318	Tawny withering 1	46.309
	CRR073319	Tawny withering 2	51.564
	CRR073320	Tawny withering 3	47.403