Gene detail

Detail information of GWHGAAZE017366

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK33983.1	2.66721E-82	unknown [Lotus japonicus]
Swissprot	tr\|Q9LEI8\|PROF6_HEVBR	3E-83	Profilin-6
trEMBL	tr\|I3S141\|I3S141_LOTJA	1E-82	Profilin {ECO:0000256\|RuleBase:RU003909}
TAIR10	AT2G19770.1	6E-63	profilin 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5178377	5180551	+
GWHAAZE00000005	mRNA	5178377	5180551	+
GWHAAZE00000005	exon	5178377	5178499	+
GWHAAZE00000005	exon	5179505	5179642	+
GWHAAZE00000005	exon	5180417	5180551	+
GWHAAZE00000005	CDS	5178377	5178499	+
GWHAAZE00000005	CDS	5179505	5179642	+
GWHAAZE00000005	CDS	5180417	5180551	+

Transcript Sequence
>GWHTAAZE017386 ATGTCGTGGCAAACATATGTGGATGATCATTTGATGTGCGACATCGAAGGCCACCGCCTCACCGCCGCTGCCATTGTCGGCCACGACGGCAGCGTTTGGGCCCAGAGCGCTTCTTTCCCCCAGATTAAGCCTGAAGAGATTACTGGTATCATGAAGGATTTTGATGAACCTGGCTTTCTTGCTCCTACTGGGCTACACCTAGCTGGCACAAAGTACATGGTTATTCAAGGAGAGCCTAATGCTGTCATCCGTGGCAAAAAGGGTGCTGGTGGTGTAACCATTAAGAAGACTGGTCAAGCTCTGATTTTTGGCATCTATGATGAGCCTGTGACACCGGGACAGTGTAACATGGTCGTTGAGAGGTTGGGGGATTACCTTATTGATCAGGGACTGTAG

Network for GWHGAAZE017366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00235.20	Profilin	1	130	2.30E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05759	PFN	Rap1 signaling pathway	map04015
		MAPK signaling pathway - fly	map04013
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0003779	molecular_function	actin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	127.705
	SRR3591706	second leaf	23.388
	SRR3591707	mature leaf	6.256
	SRR3591708	Shoot apex	22.039
	SRR3591709	Stem	35.413
	SRR3591710	White floral bud	150.539
	SRR3591711	White flower	12.181
	SRR3591712	Green floral bud	255.918
	SRR3591713	Yellow flower	6.019
SRP173429	SRR8316895	Juvenile bud stage	49.991
	SRR8316896	Juvenile bud stage	130.791
	SRR8316897	Juvenile bud stage	61.621
	SRR8316894	Third green stage	49.220
	SRR8316900	Third green stage	172.002
	SRR8316901	Third green stage	221.596
	SRR8316898	Complete white stage	14.314
	SRR8316899	Complete white stage	25.997
	SRR8316903	Complete white stage	23.738
	SRR8316902	Silver flowering stage	13.133
	SRR8316904	Silver flowering stage	14.827
	SRR8316905	Silver flowering stage	5.776
	SRR8316906	Gold flowering stage	5.196
	SRR8316907	Gold flowering stage	9.914
	SRR8316908	Gold flowering stage	6.763
SRP132670	SRR6706286	Control	141.753
	SRR6706287	Light intensity 50%	136.171
	SRR6706288	Light intensity 20%	130.567
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	157.544
	CNS0095593	Slightly white alabastrum(diploid) 2	150.025
	CNS0095594	Slightly white alabastrum(diploid) 3	192.355
	CNS0095595	Whole white alabastrum(diploid) 2	195.673
	CNS0095596	Whole white alabastrum(diploid) 3	262.644
	CNS0095597	Whole white alabastrum(diploid) 4	208.529
	CNS0095598	Silvery flower (diploied) 1	15.239
	CNS0095599	Silvery flower (diploied) 2	12.906
	CNS0095600	Silvery flower (diploied) 3	10.379
	CNS0095601	Golden flower (diploid) 1	12.463
	CNS0095602	Golden flower (diploid) 2	9.584
	CNS0095603	Golden flower (diploid) 3	10.017
	CNS0095604	Slightly white alabastrum(tetraploid) 1	279.152
	CNS0095605	Slightly white alabastrum(tetraploid) 2	294.058
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	428.568
	CNS0095608	Whole white alabastrum(tetraploid) 2	486.718
	CNS0095609	Whole white alabastrum(tetraploid) 3	287.854
	CNS0095610	Silvery flower (tetraploid) 1	7.315
	CNS0095611	Silvery flower (tetraploid) 2	5.463
	CNS0095612	Silvery flower (tetraploid) 3	23.131
	CNS0095613	Golden flower (tetraploid) 1	2.923
	CNS0095614	Golden flower (tetraploid) 2	1.614
	CNS0095615	Golden flower (tetraploid) 3	11.083
CRA001975	CRR073297	Stem 1	88.894
	CRR073298	Stem 2	92.034
	CRR073299	Stem 3	66.024
	CRR073300	Leaf 1	145.351
	CRR073301	Leaf 2	125.686
	CRR073302	Leaf 3	114.315
	CRR073303	Juvenile bud 1	125.722
	CRR073304	Juvenile bud 2	121.197
	CRR073305	Juvenile bud 3	39.874
	CRR073306	Third green 1	59.763
	CRR073307	Third green 2	113.569
	CRR073308	Third green 3	61.604
	CRR073309	Second white 1	13.664
	CRR073310	Second white 2	7.388
	CRR073311	Second white 3	2.927
	CRR073312	Silver flowering 1	32.805
	CRR073313	Silver flowering 2	33.425
	CRR073314	Silver flowering 3	15.618
	CRR073315	Gold flowering 1	88.845
	CRR073316	Gold flowering 2	67.688
	CRR073317	Gold flowering 3	70.956
	CRR073318	Tawny withering 1	60.883
	CRR073319	Tawny withering 2	46.836
	CRR073320	Tawny withering 3	74.856