Gene detail

Detail information of GWHGAAZE017361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006465721.1	5.6652E-142	PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q8L799\|MIOX1_ARATH	2E-139	Inositol oxygenase 1
trEMBL	tr\|A0A067EF91\|A0A067EF91_CITSI	2E-142	Uncharacterized protein {ECO:0000313\|EMBL:KDO53718.1}
TAIR10	AT1G14520.1	4E-114	myo-inositol oxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5097122	5110821	+
GWHAAZE00000005	mRNA	5097122	5110821	+
GWHAAZE00000005	exon	5097122	5097135	+
GWHAAZE00000005	exon	5097215	5097299	+
GWHAAZE00000005	exon	5097416	5097620	+
GWHAAZE00000005	exon	5097759	5097818	+
GWHAAZE00000005	exon	5097925	5097977	+
GWHAAZE00000005	exon	5098091	5098213	+
GWHAAZE00000005	exon	5098303	5098372	+
GWHAAZE00000005	exon	5105888	5105984	+
GWHAAZE00000005	exon	5106830	5106914	+
GWHAAZE00000005	exon	5107673	5107877	+
GWHAAZE00000005	exon	5108022	5108081	+
GWHAAZE00000005	exon	5108192	5108244	+
GWHAAZE00000005	exon	5108361	5108483	+
GWHAAZE00000005	exon	5108590	5108659	+
GWHAAZE00000005	exon	5108792	5108870	+
GWHAAZE00000005	exon	5110677	5110821	+
GWHAAZE00000005	CDS	5097122	5097135	+
GWHAAZE00000005	CDS	5097215	5097299	+
GWHAAZE00000005	CDS	5097416	5097620	+
GWHAAZE00000005	CDS	5097759	5097818	+
GWHAAZE00000005	CDS	5097925	5097977	+
GWHAAZE00000005	CDS	5098091	5098213	+
GWHAAZE00000005	CDS	5098303	5098372	+
GWHAAZE00000005	CDS	5105888	5105984	+
GWHAAZE00000005	CDS	5106830	5106914	+
GWHAAZE00000005	CDS	5107673	5107877	+
GWHAAZE00000005	CDS	5108022	5108081	+
GWHAAZE00000005	CDS	5108192	5108244	+
GWHAAZE00000005	CDS	5108361	5108483	+
GWHAAZE00000005	CDS	5108590	5108659	+
GWHAAZE00000005	CDS	5108792	5108870	+
GWHAAZE00000005	CDS	5110677	5110821	+

Transcript Sequence
>GWHTAAZE017381 ATGGCGCTAGTGCTGAACTATGCTGATTCCGAAAGCCAGAGGAATGAAAGGGTGGAGAATTTCTACAGGGAAAATCACATTAACCAGACTGTTGAGTTTGTAAAGAAGCGGAGAGAAGAGTATGTGAAACGTGACAAGGTGGAAATGAGCATATGGGAGTGCTGCGAACTACTAAACTCAGTGGTGGACGAGAGTGATCCAGACTTGGATGAGCCTCAAATTCAGCACTTGCTCCAGACTGCTGAAGCCATTAGGCAAGACTACCCTAATGAAGATTGGCTTCACTTGACTGCTTTAATCCATGATCTTGGGAAGGTTCTTCTTCTTCCCCACTTCGGATCACTTCCTCAATGGGCTGTTGTAGGGGATACATTTCCTGTTGGGTGTGCTTTTGATGAATCAAATGTTCATTACAAGTACTTCAAGGAGAATCCGGATTACAACAACCCTGCTTACCACAGTAAATTGGGGATTTATTCTGAAGGTTGTGGACTCAACAATGTGCTTATGTCATTTGGCCACGACGACTACATGTATTTGGTTGCCAAGGACAATGGGTCAACTCTACCATCAGCTGCTCTTTTCATCATCCGATACCACTCGTTTTATGGGATTGGATCTGAGGAGAATAAGATCGTCAACAAGAATTTGGCATTGAAAAGTGGATTTACTGTGCCCCATAGCAATTCATTTGGCCGCAAATTTAGGAATTATACTGATTCCGAAAGCCAGAGGAATGAAGGGGTGGAGAACTTCTACAGGGAAAATCACATTAACCAGACTGTTGAGTTTGTAAAGAAGCGGAGACAAGAGTATGCAAAACGTGACAAGGTGGAAATGAGCATATGGGAGTGCTGCGAACTACTAAACTCAGTGGTGGACGAGAGCGATCCAGACTTGGATGAGCCTCAAATTCAGCACTTGCTCCAGACTGCTGAAGCCATTAGGCAAGACTACCCTAATGAAGATTGGCTTCAGTTGACTGCTTTAATCCATGATCTTGGGAAGGTTCTTCTTCTTCCCCACTTTGGATCACTTCCTCAGTGGGCTGTTGTAGGGGATACATTTCCTGTCGGGTGTGCTTTTGACGAATCAATAGTTCATTACAAGTACTTCAAGGAGAATCCGGATTACAACAACCCAGCTTACAACACTAAATTCGGAATGTATTCTGAAGGCTGTGGACTTGACAATGTGCTTATGTCATTTGGCCATGATGACTACATGTATTTGGTGGCCAAGGAAAACGGGACAACTCTACCATCGGCTGCTCTTTTCATCGTTCGATACCACTCATTCTATGCTCTGCACAAGGCAGGGGCATATACTTATCTAATGAATGATGCAGACAAAGAGAATCTCAAGTGGCTCCATACATTCAAATTCCCTCTCCTGCTCCAAGCTATTGATCACGCTGCATTTGCCGCTCCGCCAACCACACCACCACCAAAGCAACTTCATCGGCGAGTCATCATCCTCCCGGAGGATTGTTCGAGTTCACGGTCGGTAGATGGATTCGAGGGTTGA

Network for GWHGAAZE017361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05153.16	MIOX	16	209	3.10E-93
PF05153.16	MIOX	247	461	1.30E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00469	MIOX	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562

Gene Ontology

GO term	Ontology	Name
GO:0019310	biological_process	inositol catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005737	cellular_component	cytoplasm
GO:0005506	molecular_function	iron ion binding
GO:0050113	molecular_function	inositol oxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.172
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.070
	SRR3591708	Shoot apex	0.464
	SRR3591709	Stem	2.131
	SRR3591710	White floral bud	252.380
	SRR3591711	White flower	6.616
	SRR3591712	Green floral bud	230.547
	SRR3591713	Yellow flower	1.927
SRP173429	SRR8316895	Juvenile bud stage	2.126
	SRR8316896	Juvenile bud stage	19.125
	SRR8316897	Juvenile bud stage	27.070
	SRR8316894	Third green stage	15.820
	SRR8316900	Third green stage	134.387
	SRR8316901	Third green stage	135.625
	SRR8316898	Complete white stage	0.350
	SRR8316899	Complete white stage	1.860
	SRR8316903	Complete white stage	0.229
	SRR8316902	Silver flowering stage	1.933
	SRR8316904	Silver flowering stage	3.925
	SRR8316905	Silver flowering stage	1.323
	SRR8316906	Gold flowering stage	0.905
	SRR8316907	Gold flowering stage	0.332
	SRR8316908	Gold flowering stage	0.062
SRP132670	SRR6706286	Control	56.656
	SRR6706287	Light intensity 50%	60.522
	SRR6706288	Light intensity 20%	52.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	150.373
	CNS0095593	Slightly white alabastrum(diploid) 2	122.769
	CNS0095594	Slightly white alabastrum(diploid) 3	160.757
	CNS0095595	Whole white alabastrum(diploid) 2	355.288
	CNS0095596	Whole white alabastrum(diploid) 3	410.454
	CNS0095597	Whole white alabastrum(diploid) 4	473.369
	CNS0095598	Silvery flower (diploied) 1	6.412
	CNS0095599	Silvery flower (diploied) 2	19.383
	CNS0095600	Silvery flower (diploied) 3	5.781
	CNS0095601	Golden flower (diploid) 1	4.270
	CNS0095602	Golden flower (diploid) 2	4.360
	CNS0095603	Golden flower (diploid) 3	5.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	370.351
	CNS0095605	Slightly white alabastrum(tetraploid) 2	400.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.423
	CNS0095607	Whole white alabastrum(tetraploid) 1	722.621
	CNS0095608	Whole white alabastrum(tetraploid) 2	794.907
	CNS0095609	Whole white alabastrum(tetraploid) 3	335.139
	CNS0095610	Silvery flower (tetraploid) 1	1.561
	CNS0095611	Silvery flower (tetraploid) 2	15.491
	CNS0095612	Silvery flower (tetraploid) 3	34.249
	CNS0095613	Golden flower (tetraploid) 1	4.142
	CNS0095614	Golden flower (tetraploid) 2	0.974
	CNS0095615	Golden flower (tetraploid) 3	25.521
CRA001975	CRR073297	Stem 1	14.977
	CRR073298	Stem 2	17.860
	CRR073299	Stem 3	7.326
	CRR073300	Leaf 1	146.842
	CRR073301	Leaf 2	87.636
	CRR073302	Leaf 3	47.580
	CRR073303	Juvenile bud 1	78.533
	CRR073304	Juvenile bud 2	66.216
	CRR073305	Juvenile bud 3	7.602
	CRR073306	Third green 1	53.200
	CRR073307	Third green 2	96.484
	CRR073308	Third green 3	61.422
	CRR073309	Second white 1	6.076
	CRR073310	Second white 2	11.985
	CRR073311	Second white 3	13.427
	CRR073312	Silver flowering 1	61.555
	CRR073313	Silver flowering 2	64.239
	CRR073314	Silver flowering 3	34.685
	CRR073315	Gold flowering 1	80.637
	CRR073316	Gold flowering 2	13.180
	CRR073317	Gold flowering 3	38.922
	CRR073318	Tawny withering 1	59.103
	CRR073319	Tawny withering 2	59.700
	CRR073320	Tawny withering 3	52.319