Detail information of GWHGAAZE017353


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97941.14.7921E-137unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TNW6|A0A068TNW6_COFCA2E-137Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97941.1}
TAIR10AT1G17730.15E-92vacuolar protein sorting 46.1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene50090185009930+
GWHAAZE00000005mRNA50090185009930+
GWHAAZE00000005exon50090185009342+
GWHAAZE00000005exon50096445009930+
GWHAAZE00000005CDS50090185009342+
GWHAAZE00000005CDS50096445009930+
Transcript Sequence

Network for GWHGAAZE017353

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf7111694.30E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12197CHMP1, VPS46, DID2 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf400.579
SRR3591706second leaf143.756
SRR3591707mature leaf125.001
SRR3591708Shoot apex240.201
SRR3591709Stem375.722
SRR3591710White floral bud259.688
SRR3591711White flower289.315
SRR3591712Green floral bud231.098
SRR3591713Yellow flower225.845
SRP173429 SRR8316895Juvenile bud stage 322.806
SRR8316896Juvenile bud stage 391.501
SRR8316897Juvenile bud stage 276.499
SRR8316894Third green stage 93.788
SRR8316900Third green stage 229.770
SRR8316901Third green stage 313.372
SRR8316898Complete white stage 110.436
SRR8316899Complete white stage 437.395
SRR8316903Complete white stage 145.851
SRR8316902Silver flowering stage97.791
SRR8316904Silver flowering stage104.894
SRR8316905Silver flowering stage59.605
SRR8316906Gold flowering stage 190.925
SRR8316907Gold flowering stage 193.362
SRR8316908Gold flowering stage 208.054
SRP132670SRR6706286Control194.229
SRR6706287Light intensity 50%200.535
SRR6706288Light intensity 20%213.352
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1307.282
CNS0095593Slightly white alabastrum(diploid) 2370.163
CNS0095594Slightly white alabastrum(diploid) 3338.232
CNS0095595Whole white alabastrum(diploid) 2339.802
CNS0095596Whole white alabastrum(diploid) 3210.036
CNS0095597Whole white alabastrum(diploid) 4296.591
CNS0095598Silvery flower (diploied) 1446.263
CNS0095599Silvery flower (diploied) 2444.804
CNS0095600Silvery flower (diploied) 3356.238
CNS0095601Golden flower (diploid) 1432.191
CNS0095602Golden flower (diploid) 2427.680
CNS0095603Golden flower (diploid) 3436.430
CNS0095604Slightly white alabastrum(tetraploid) 1211.216
CNS0095605Slightly white alabastrum(tetraploid) 2209.482
CNS0095606Slightly white alabastrum(tetraploid) 3244.990
CNS0095607Whole white alabastrum(tetraploid) 1206.072
CNS0095608Whole white alabastrum(tetraploid) 2202.617
CNS0095609Whole white alabastrum(tetraploid) 3210.219
CNS0095610Silvery flower (tetraploid) 1234.195
CNS0095611Silvery flower (tetraploid) 2255.966
CNS0095612Silvery flower (tetraploid) 3260.811
CNS0095613Golden flower (tetraploid) 1233.384
CNS0095614Golden flower (tetraploid) 2228.571
CNS0095615Golden flower (tetraploid) 3277.829
CRA001975CRR073297Stem 1318.090
CRR073298Stem 2353.802
CRR073299Stem 3442.742
CRR073300Leaf 1430.297
CRR073301Leaf 2521.259
CRR073302Leaf 3402.071
CRR073303Juvenile bud 1443.196
CRR073304Juvenile bud 2420.571
CRR073305Juvenile bud 3448.896
CRR073306Third green 1353.907
CRR073307Third green 2417.275
CRR073308Third green 3333.895
CRR073309Second white 1311.483
CRR073310Second white 2308.889
CRR073311Second white 3217.954
CRR073312Silver flowering 1308.835
CRR073313Silver flowering 2355.840
CRR073314Silver flowering 3321.201
CRR073315Gold flowering 1255.321
CRR073316Gold flowering 2292.451
CRR073317Gold flowering 3241.795
CRR073318Tawny withering 1432.441
CRR073319Tawny withering 2468.378
CRR073320Tawny withering 3411.443