Gene detail

Detail information of GWHGAAZE017346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010262218.1	3.78876E-76	PREDICTED: dof zinc finger protein DOF3.1 [Nelumbo nucifera]
Swissprot	tr\|O82155\|DOF17_ARATH	3E-38	Dof zinc finger protein DOF1.7
trEMBL	tr\|A0A068TPR7\|A0A068TPR7_COFCA	4E-70	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97934.1}
TAIR10	AT1G51700.1	5E-32	DOF zinc finger protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4856635	4857384	+
GWHAAZE00000005	mRNA	4856635	4857384	+
GWHAAZE00000005	exon	4856635	4857384	+
GWHAAZE00000005	CDS	4856635	4857384	+

Transcript Sequence
>GWHTAAZE017366 ATGCAAGACCTATCAATTTATCCACAAATTAAACCACAATTCCCAGAACAAGAACACTTAAAATGCCCAAGATGCGATTCATCAAACACCAAATTCTGTTACTACAATAACTACAACCTCTCTCAGCCCCGTCACTTCTGCAAGAACTGCAAGAGGTATTGGACCAAAGGCGGCACCCTCCGGAACATTCCTGTGGGAGGCGGCAGCCGCAAAAACACAAAGCGCTCTGCAAACCCAAAGGATAACAAACTGGTACCGGGGCGTAGCAAATTGGTATCAGAAGATAACAAACTGGATTTAGCTTTAGAGGATAACAAACTGGTACCAGGGCGCAACAGCTCCTCCTCTGTTTCAACTTCAACAAACACTGAAGCCCATCAGCCCAAACCGGACCCGGATCCGGCCGGGTACGGTTTATCTGGATTTGATCAAGAGCATCGGATGTTAGATGTAGGTGGGAGTTTCAGTTCACTTTTGGTGAATGGGCAATTTGGGAGTATGTTGGAGGGACTGAATTCGAACGGGCTGAATCTAGATATGAATGAATTTGGAGAGAACCCGAATTCGAGTTCCGGATCCACAATGATCCAAAACGCTGGTGGTACTGAATTTGAGATGAGTAATAATAATGAAAGGGAGAGGTTTTTGGGTGGGGTTCAAAGTGGTGGTGGAGATTCGAGCTGTTGGAATAATAGTGCAAATGGGTGGCCTGATCTTGCTATTTTCACGCCAGGTTCGAGCTTTCAGTAG

Network for GWHGAAZE017346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	18	74	2.60E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.738
	SRR3591706	second leaf	18.299
	SRR3591707	mature leaf	35.539
	SRR3591708	Shoot apex	13.084
	SRR3591709	Stem	47.734
	SRR3591710	White floral bud	20.735
	SRR3591711	White flower	31.895
	SRR3591712	Green floral bud	19.299
	SRR3591713	Yellow flower	14.150
SRP173429	SRR8316895	Juvenile bud stage	51.946
	SRR8316896	Juvenile bud stage	49.020
	SRR8316897	Juvenile bud stage	35.770
	SRR8316894	Third green stage	9.579
	SRR8316900	Third green stage	20.565
	SRR8316901	Third green stage	32.082
	SRR8316898	Complete white stage	5.133
	SRR8316899	Complete white stage	54.270
	SRR8316903	Complete white stage	9.937
	SRR8316902	Silver flowering stage	7.314
	SRR8316904	Silver flowering stage	8.936
	SRR8316905	Silver flowering stage	3.453
	SRR8316906	Gold flowering stage	13.231
	SRR8316907	Gold flowering stage	10.561
	SRR8316908	Gold flowering stage	9.265
SRP132670	SRR6706286	Control	10.995
	SRR6706287	Light intensity 50%	9.592
	SRR6706288	Light intensity 20%	10.992
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.036
	CNS0095593	Slightly white alabastrum(diploid) 2	57.267
	CNS0095594	Slightly white alabastrum(diploid) 3	50.506
	CNS0095595	Whole white alabastrum(diploid) 2	43.634
	CNS0095596	Whole white alabastrum(diploid) 3	7.886
	CNS0095597	Whole white alabastrum(diploid) 4	23.414
	CNS0095598	Silvery flower (diploied) 1	69.369
	CNS0095599	Silvery flower (diploied) 2	88.295
	CNS0095600	Silvery flower (diploied) 3	34.633
	CNS0095601	Golden flower (diploid) 1	52.306
	CNS0095602	Golden flower (diploid) 2	49.660
	CNS0095603	Golden flower (diploid) 3	52.645
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.942
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.379
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.010
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.709
	CNS0095610	Silvery flower (tetraploid) 1	13.963
	CNS0095611	Silvery flower (tetraploid) 2	8.391
	CNS0095612	Silvery flower (tetraploid) 3	5.620
	CNS0095613	Golden flower (tetraploid) 1	10.497
	CNS0095614	Golden flower (tetraploid) 2	11.708
	CNS0095615	Golden flower (tetraploid) 3	5.269
CRA001975	CRR073297	Stem 1	20.095
	CRR073298	Stem 2	24.447
	CRR073299	Stem 3	25.848
	CRR073300	Leaf 1	35.647
	CRR073301	Leaf 2	51.479
	CRR073302	Leaf 3	23.340
	CRR073303	Juvenile bud 1	26.737
	CRR073304	Juvenile bud 2	26.321
	CRR073305	Juvenile bud 3	55.876
	CRR073306	Third green 1	10.459
	CRR073307	Third green 2	17.390
	CRR073308	Third green 3	17.690
	CRR073309	Second white 1	4.673
	CRR073310	Second white 2	10.617
	CRR073311	Second white 3	6.703
	CRR073312	Silver flowering 1	6.520
	CRR073313	Silver flowering 2	9.821
	CRR073314	Silver flowering 3	8.422
	CRR073315	Gold flowering 1	17.693
	CRR073316	Gold flowering 2	17.139
	CRR073317	Gold flowering 3	17.780
	CRR073318	Tawny withering 1	42.659
	CRR073319	Tawny withering 2	51.199
	CRR073320	Tawny withering 3	49.932