Gene detail

Detail information of GWHGAAZE017345

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008228325.1	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X3 [Prunus mume]
Swissprot	tr\|Q39247\|2ABB_ARATH	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
trEMBL	tr\|M5WR94\|M5WR94_PRUPE	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256\|RuleBase:RU331113}
TAIR10	AT1G17720.2	Protein phosphatase 2A, regulatory subunit PR55

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4831070	4843123	+
GWHAAZE00000005	mRNA	4831070	4843123	+
GWHAAZE00000005	exon	4831070	4831184	+
GWHAAZE00000005	exon	4833610	4833710	+
GWHAAZE00000005	exon	4833882	4833977	+
GWHAAZE00000005	exon	4835034	4835153	+
GWHAAZE00000005	exon	4835601	4835807	+
GWHAAZE00000005	exon	4837014	4837105	+
GWHAAZE00000005	exon	4838091	4838209	+
GWHAAZE00000005	exon	4839041	4839164	+
GWHAAZE00000005	exon	4840154	4840277	+
GWHAAZE00000005	exon	4841514	4841582	+
GWHAAZE00000005	exon	4841677	4841768	+
GWHAAZE00000005	exon	4841854	4841931	+
GWHAAZE00000005	exon	4842427	4842494	+
GWHAAZE00000005	exon	4842575	4843123	+
GWHAAZE00000005	CDS	4831070	4831184	+
GWHAAZE00000005	CDS	4833610	4833710	+
GWHAAZE00000005	CDS	4833882	4833977	+
GWHAAZE00000005	CDS	4835034	4835153	+
GWHAAZE00000005	CDS	4835601	4835807	+
GWHAAZE00000005	CDS	4837014	4837105	+
GWHAAZE00000005	CDS	4838091	4838209	+
GWHAAZE00000005	CDS	4839041	4839164	+
GWHAAZE00000005	CDS	4840154	4840277	+
GWHAAZE00000005	CDS	4841514	4841582	+
GWHAAZE00000005	CDS	4841677	4841768	+
GWHAAZE00000005	CDS	4841854	4841931	+
GWHAAZE00000005	CDS	4842427	4842494	+
GWHAAZE00000005	CDS	4842575	4842711	+
GWHAAZE00000005	three_prime_UTR	4842712	4843123	+

Transcript Sequence
>GWHTAAZE017365 ATGAACGGTGATAGAGAGATAGCGGCAGCTCCGGCGGGACCACCACCACCGCCTCTCGAGTGGAAATTCTCTCAGGTTTTCGGTGAAAGGACTGCAGGAGAGGAAGTACAAGAAGTGGATATAATTTCAGCTATCGAGTTTGATAAATCTGGTGACCATCTTGCTACTGGTGACCGTGGGGGCAGGGTTGTATTATTTGAAAGGACTGATACAAAGAATGGTGGAAGTCGAAGGGATTTAGAGAAGGCGGATCATCCAATTAGGCATCCGGAGTTCCGTTACAAAACTGAGTTCCAGAGCCATGAACCAGAGTTTGATTATCTCAAGAGTTTGGAGATTGAGGAGAAAATTAACAAGATCAGATGGTGCCAAACAGCCAATGGTGCCCTCTTTCTTTTGTCTACTAATGATAAGACTATTAAGTTTTGGAAGGTCCAAGAGAAGAAGGTGAAGAAAATTTCTGAGGTGAATGTTGACCCTTCCAAAGCTATTGGCAATGGCAGCATTTCCGGTTCAAGTGTTTCTTCCAGTACTAAATCGTATCTTGCAAATGGTGGATGCTTAGATGGATCTTACACTTCTTTGAGCAACGAGCTTTCGTTCCCACCAGGGGGCATTCCATCTCTACGTCTACCCGTGGTAACCAGTAATGAGACCAGCCTCGTGGCAAGATGTAGAAGAGTATATGCTCATGCACATGACTATCACATCAATTCTATCTCAAACAACAGTGATGGTGAAACTTTTATTTCGGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGTAATCAGAGTTTCAATATTGTTGATGTGAAGCCAGCAAACATGGAGGATCTAACTGAAGTGATAACATCAGCAGAATTTCATCCTACCCATTGTAACACGTTGGCTTATAGTAGTTCAAAAGGTTCAATTCGTCTTATTGATTTGCGGCAATCAGCTTTATGCGATACTCATTCTAAATTGTTTGAGGAACAGGAGGCACCTGGTTCGAGATCCTTTTTCACTGAAATAATCGCTTCAATTTCAGATATTAAGTTTGGGAAGGATGGAAGACATATATTAAGTCGTGATTACATGACCCTTAAGTTATGGGATATTAATATGGACTCTGGTCCAGTTGCAACCTTCCAGGTTCACGAGCATTTAAGACCTAAGCTATGTGATTTGTATGAAAATGATTCCATCTTTGATAAATTTGAGTGTTGCTTGAGTGGTGATGGTCAGCGGGTGGCAACTGGTTCTTACAGCAATCTATTCCGTGTTTTTGGTTGCGCTGCTGGAAGTACTGAAGTTACTAGTCTGGAGGCTAGCAAAAATCCCATGAGGAGACAAGTTCAGACACCTTCAAGGCCTTCCAGATCGCTAAGTAGCATAACACGTGTTGTACGACGAGGGGCAGAAAGCCCGGGGGTTGATGCAAATGGAAATTCGTTTGATTTTACAACAAAACTGCTCCACCTTGCATGGCATCCAACGGAAAACTCGATTGCCTGTGCTGCTGCAAACAGCTTGTACATGTACTATGCATAATGGATGATCAAATCCAGAAAAGACGCGCATATTGTTGCTCGGTTTAACAATTTTTGGGTTGCCAAATGTAGTAGGCTTCCTTTCCAAGCAACATGAGGAGGCTTTTTCAACGTTTTCTCTTTCTCAACTGCCTCGTAAATCTGTAGCATGTACCATCATTGTCATGAATCCACAACAATGCAACCCATCACTTCCTTGACATGGAGCTTGTTTCCACACCCCTTCACCCCACCAGAAAAAAAAATAAAAAAATGCATAATCTCTTCCCTATTTCTGCTGCGCCATCCTCTATTTCTTTCATTTTTTTGTTACCTTCCTTAAAAAGAAAGGGTGCAGTCATGTTATTTTGTATTTGGGTGGAAGTGAGGACGAAAAAAAGGGGATTGTAGCTCTCCTACAACCAAAACTAAAG

Network for GWHGAAZE017345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	225	261	0.14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04354	PPP2R2	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0005515	molecular_function	protein binding
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.803
	SRR3591706	second leaf	25.016
	SRR3591707	mature leaf	34.487
	SRR3591708	Shoot apex	29.572
	SRR3591709	Stem	36.117
	SRR3591710	White floral bud	28.239
	SRR3591711	White flower	25.462
	SRR3591712	Green floral bud	36.391
	SRR3591713	Yellow flower	22.118
SRP173429	SRR8316895	Juvenile bud stage	17.837
	SRR8316896	Juvenile bud stage	27.490
	SRR8316897	Juvenile bud stage	14.259
	SRR8316894	Third green stage	11.505
	SRR8316900	Third green stage	33.842
	SRR8316901	Third green stage	30.298
	SRR8316898	Complete white stage	10.555
	SRR8316899	Complete white stage	34.554
	SRR8316903	Complete white stage	18.775
	SRR8316902	Silver flowering stage	9.916
	SRR8316904	Silver flowering stage	14.784
	SRR8316905	Silver flowering stage	6.158
	SRR8316906	Gold flowering stage	23.010
	SRR8316907	Gold flowering stage	15.707
	SRR8316908	Gold flowering stage	23.539
SRP132670	SRR6706286	Control	22.836
	SRR6706287	Light intensity 50%	23.687
	SRR6706288	Light intensity 20%	23.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.280
	CNS0095593	Slightly white alabastrum(diploid) 2	25.075
	CNS0095594	Slightly white alabastrum(diploid) 3	27.360
	CNS0095595	Whole white alabastrum(diploid) 2	25.422
	CNS0095596	Whole white alabastrum(diploid) 3	25.101
	CNS0095597	Whole white alabastrum(diploid) 4	26.402
	CNS0095598	Silvery flower (diploied) 1	20.697
	CNS0095599	Silvery flower (diploied) 2	16.526
	CNS0095600	Silvery flower (diploied) 3	20.199
	CNS0095601	Golden flower (diploid) 1	17.701
	CNS0095602	Golden flower (diploid) 2	26.015
	CNS0095603	Golden flower (diploid) 3	21.800
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.025
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.408
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.502
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.177
	CNS0095610	Silvery flower (tetraploid) 1	17.651
	CNS0095611	Silvery flower (tetraploid) 2	17.284
	CNS0095612	Silvery flower (tetraploid) 3	18.542
	CNS0095613	Golden flower (tetraploid) 1	12.702
	CNS0095614	Golden flower (tetraploid) 2	16.517
	CNS0095615	Golden flower (tetraploid) 3	16.786
CRA001975	CRR073297	Stem 1	34.549
	CRR073298	Stem 2	32.695
	CRR073299	Stem 3	24.923
	CRR073300	Leaf 1	35.442
	CRR073301	Leaf 2	32.930
	CRR073302	Leaf 3	26.532
	CRR073303	Juvenile bud 1	24.498
	CRR073304	Juvenile bud 2	22.576
	CRR073305	Juvenile bud 3	23.431
	CRR073306	Third green 1	14.504
	CRR073307	Third green 2	12.984
	CRR073308	Third green 3	14.339
	CRR073309	Second white 1	13.184
	CRR073310	Second white 2	15.426
	CRR073311	Second white 3	10.479
	CRR073312	Silver flowering 1	9.377
	CRR073313	Silver flowering 2	7.965
	CRR073314	Silver flowering 3	8.530
	CRR073315	Gold flowering 1	15.171
	CRR073316	Gold flowering 2	21.128
	CRR073317	Gold flowering 3	15.774
	CRR073318	Tawny withering 1	32.509
	CRR073319	Tawny withering 2	30.526
	CRR073320	Tawny withering 3	34.130