Gene detail

Detail information of GWHGAAZE017343

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33734.1	1.1915E-179	hypothetical protein JCGZ_07305 [Jatropha curcas]
Swissprot	tr\|Q42538\|SAT5_ARATH	1E-170	Serine acetyltransferase 5
trEMBL	tr\|A0A067KPM3\|A0A067KPM3_JATCU	4E-180	Uncharacterized protein {ECO:0000313\|EMBL:KDP33734.1}
TAIR10	AT5G56760.1	3E-123	serine acetyltransferase 1;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4773368	4776833	+
GWHAAZE00000005	mRNA	4773368	4776833	+
GWHAAZE00000005	exon	4773368	4773796	+
GWHAAZE00000005	exon	4776351	4776833	+
GWHAAZE00000005	CDS	4773368	4773796	+
GWHAAZE00000005	CDS	4776351	4776833	+

Transcript Sequence
>GWHTAAZE017363 AATGGTAACAATATGCCCGTCCACGACCTAAACATGCCCTCGCACCCTACAAACACAACAATGTCCGGCTTAACTCCGGCCGCCGTTGAAATCGAAGACGACGCATGGGTTTGGGGCCAAATTAAAGCCGAGGCTAGGCTCGACGCCGAATCGGAGCCGGCTCTAGCCAGTTACCTCTACTCCACAATTCTCTCTCACTCTTCTCTTCCTCGCTCTCTCTCCTTCCACTTAGGCAACAAGCTTTGTTCCTCTACCCTTCTCTCCACTCTCCTCTACGATCTCTTCCTCAACACCTTCTCCTCCGATCAATCCATCCGATCCGCCACCGTCGCCGACCTACGCGCCGCCCGCCAGCGTGACCCCGCTTGTACCTCCTTTTCTCACTGTTTATTGAACTACAAGGGCTTTTTGGCAATCCAGGCCCATCGGGTTGCCCATAGGCTGTGGGTACAGAACCGGAAGCCCATAGCCCTTGCGCTACACTCGAGGATTGCCGATGTTTTTGCCGTGGACATCCACCCAGCGGCAAGGATCGGGAAGGGAGTGTTGCTCGACCACGCAACAGGGGTGGTGATCGGAGAGACGGCAGTGGTGGGAAATAATGTGTCAATTTTGCATCACGTGACTTTGGGTGGGACTGGGAAGATGGGAGGGGATAGGCACCCGAAGATTGGGGATGGGGTTTTGATTGGGGCAGGGGCGACGGTGTTGGGGAATGTGAAGATTGGGGAGGGGGCGAAGATTGGGGCAGGATCAGTGGTGTTGATTGATGTGCCGCCGAGGACAACGGCAGTGGGGAATCCGGCGAGGTTGGTGGGTGGGAAGGAGCAGCCTAATGTGCATGAGGATGTGCCTGGAGAGTCAATGGATCATACTTCCTTTATTTCGCAGTGGTCTGATTATATCATCTAA

Network for GWHGAAZE017343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06426.15	SATase_N	37	141	5.30E-36
PF00132.25	Hexapep	176	212	0.00027
PF00132.25	Hexapep	221	254	7.20E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00640	cysE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270
		Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0005737	cellular_component	cytoplasm
GO:0009001	molecular_function	serine O-acetyltransferase activity
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.142
	SRR3591706	second leaf	37.178
	SRR3591707	mature leaf	52.357
	SRR3591708	Shoot apex	34.924
	SRR3591709	Stem	27.557
	SRR3591710	White floral bud	23.614
	SRR3591711	White flower	42.348
	SRR3591712	Green floral bud	22.041
	SRR3591713	Yellow flower	13.280
SRP173429	SRR8316895	Juvenile bud stage	24.630
	SRR8316896	Juvenile bud stage	26.414
	SRR8316897	Juvenile bud stage	13.681
	SRR8316894	Third green stage	7.752
	SRR8316900	Third green stage	21.355
	SRR8316901	Third green stage	21.058
	SRR8316898	Complete white stage	4.625
	SRR8316899	Complete white stage	19.507
	SRR8316903	Complete white stage	8.246
	SRR8316902	Silver flowering stage	11.045
	SRR8316904	Silver flowering stage	7.280
	SRR8316905	Silver flowering stage	2.194
	SRR8316906	Gold flowering stage	6.696
	SRR8316907	Gold flowering stage	7.413
	SRR8316908	Gold flowering stage	7.817
SRP132670	SRR6706286	Control	31.689
	SRR6706287	Light intensity 50%	29.437
	SRR6706288	Light intensity 20%	28.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.501
	CNS0095593	Slightly white alabastrum(diploid) 2	39.783
	CNS0095594	Slightly white alabastrum(diploid) 3	34.653
	CNS0095595	Whole white alabastrum(diploid) 2	24.978
	CNS0095596	Whole white alabastrum(diploid) 3	18.227
	CNS0095597	Whole white alabastrum(diploid) 4	15.962
	CNS0095598	Silvery flower (diploied) 1	35.658
	CNS0095599	Silvery flower (diploied) 2	31.811
	CNS0095600	Silvery flower (diploied) 3	25.570
	CNS0095601	Golden flower (diploid) 1	31.058
	CNS0095602	Golden flower (diploid) 2	30.123
	CNS0095603	Golden flower (diploid) 3	27.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.365
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.902
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.201
	CNS0095610	Silvery flower (tetraploid) 1	31.692
	CNS0095611	Silvery flower (tetraploid) 2	24.708
	CNS0095612	Silvery flower (tetraploid) 3	18.288
	CNS0095613	Golden flower (tetraploid) 1	13.023
	CNS0095614	Golden flower (tetraploid) 2	15.643
	CNS0095615	Golden flower (tetraploid) 3	9.789
CRA001975	CRR073297	Stem 1	37.852
	CRR073298	Stem 2	35.205
	CRR073299	Stem 3	46.319
	CRR073300	Leaf 1	22.600
	CRR073301	Leaf 2	30.509
	CRR073302	Leaf 3	25.843
	CRR073303	Juvenile bud 1	16.941
	CRR073304	Juvenile bud 2	14.941
	CRR073305	Juvenile bud 3	32.089
	CRR073306	Third green 1	6.427
	CRR073307	Third green 2	7.081
	CRR073308	Third green 3	9.812
	CRR073309	Second white 1	10.101
	CRR073310	Second white 2	4.506
	CRR073311	Second white 3	3.336
	CRR073312	Silver flowering 1	4.345
	CRR073313	Silver flowering 2	6.592
	CRR073314	Silver flowering 3	6.524
	CRR073315	Gold flowering 1	46.427
	CRR073316	Gold flowering 2	53.199
	CRR073317	Gold flowering 3	49.540
	CRR073318	Tawny withering 1	30.369
	CRR073319	Tawny withering 2	31.047
	CRR073320	Tawny withering 3	28.443