Detail information of GWHGAAZE017341


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654545.10PREDICTED: inactive protein kinase SELMODRAFT_444075 [Vitis vinifera]
Swissprottr|P0DH62|Y4407_SELML2E-149Inactive protein kinase SELMODRAFT_444075
trEMBLtr|F6HY31|F6HY31_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59354.1}
TAIR10AT3G13690.10Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene46731764677233-
GWHAAZE00000005mRNA46731764677233-
GWHAAZE00000005exon46770054677233-
GWHAAZE00000005exon46761944676348-
GWHAAZE00000005exon46760034676097-
GWHAAZE00000005exon46748814675905-
GWHAAZE00000005exon46745294674689-
GWHAAZE00000005exon46741294674205-
GWHAAZE00000005exon46738984674045-
GWHAAZE00000005exon46736454673794-
GWHAAZE00000005exon46731764673427-
GWHAAZE00000005CDS46770054677233-
GWHAAZE00000005CDS46761944676348-
GWHAAZE00000005CDS46760034676097-
GWHAAZE00000005CDS46748814675905-
GWHAAZE00000005CDS46745294674689-
GWHAAZE00000005CDS46741294674205-
GWHAAZE00000005CDS46738984674045-
GWHAAZE00000005CDS46736454673794-
GWHAAZE00000005CDS46731764673427-
Transcript Sequence

Network for GWHGAAZE017341

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr4196831.30E-40
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_PERK-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.191
SRR3591706second leaf29.042
SRR3591707mature leaf13.264
SRR3591708Shoot apex29.568
SRR3591709Stem7.295
SRR3591710White floral bud4.547
SRR3591711White flower3.178
SRR3591712Green floral bud11.916
SRR3591713Yellow flower0.648
SRP173429 SRR8316895Juvenile bud stage 12.595
SRR8316896Juvenile bud stage 11.866
SRR8316897Juvenile bud stage 6.822
SRR8316894Third green stage 5.244
SRR8316900Third green stage 10.057
SRR8316901Third green stage 9.409
SRR8316898Complete white stage 0.656
SRR8316899Complete white stage 13.712
SRR8316903Complete white stage 1.434
SRR8316902Silver flowering stage0.390
SRR8316904Silver flowering stage0.344
SRR8316905Silver flowering stage0.076
SRR8316906Gold flowering stage 0.473
SRR8316907Gold flowering stage 0.480
SRR8316908Gold flowering stage 0.767
SRP132670SRR6706286Control7.245
SRR6706287Light intensity 50%8.548
SRR6706288Light intensity 20%9.563
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.621
CNS0095593Slightly white alabastrum(diploid) 28.020
CNS0095594Slightly white alabastrum(diploid) 37.657
CNS0095595Whole white alabastrum(diploid) 26.222
CNS0095596Whole white alabastrum(diploid) 34.267
CNS0095597Whole white alabastrum(diploid) 43.551
CNS0095598Silvery flower (diploied) 16.634
CNS0095599Silvery flower (diploied) 24.872
CNS0095600Silvery flower (diploied) 31.989
CNS0095601Golden flower (diploid) 14.607
CNS0095602Golden flower (diploid) 23.019
CNS0095603Golden flower (diploid) 33.150
CNS0095604Slightly white alabastrum(tetraploid) 111.453
CNS0095605Slightly white alabastrum(tetraploid) 29.180
CNS0095606Slightly white alabastrum(tetraploid) 323.224
CNS0095607Whole white alabastrum(tetraploid) 15.881
CNS0095608Whole white alabastrum(tetraploid) 22.867
CNS0095609Whole white alabastrum(tetraploid) 35.845
CNS0095610Silvery flower (tetraploid) 10.645
CNS0095611Silvery flower (tetraploid) 22.527
CNS0095612Silvery flower (tetraploid) 30.934
CNS0095613Golden flower (tetraploid) 10.114
CNS0095614Golden flower (tetraploid) 20.704
CNS0095615Golden flower (tetraploid) 30.117
CRA001975CRR073297Stem 119.305
CRR073298Stem 216.519
CRR073299Stem 313.709
CRR073300Leaf 114.066
CRR073301Leaf 213.989
CRR073302Leaf 38.732
CRR073303Juvenile bud 19.576
CRR073304Juvenile bud 22.273
CRR073305Juvenile bud 314.167
CRR073306Third green 10.419
CRR073307Third green 20.612
CRR073308Third green 30.397
CRR073309Second white 10.038
CRR073310Second white 20.120
CRR073311Second white 30.059
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.022
CRR073314Silver flowering 30.000
CRR073315Gold flowering 15.271
CRR073316Gold flowering 24.066
CRR073317Gold flowering 33.666
CRR073318Tawny withering 15.296
CRR073319Tawny withering 22.818
CRR073320Tawny withering 37.261