Gene detail

Detail information of GWHGAAZE017334

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002527412.1	dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Swissprot	tr\|Q9C718\|RH20_ARATH	DEAD-box ATP-dependent RNA helicase 20
trEMBL	tr\|B9SN43\|B9SN43_RICCO	Dead box ATP-dependent RNA helicase, putative {ECO:0000313\|EMBL:EEF34978.1}
TAIR10	AT1G55150.1	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4590520	4598000	+
GWHAAZE00000005	mRNA	4590520	4598000	+
GWHAAZE00000005	exon	4590520	4590575	+
GWHAAZE00000005	exon	4590691	4590956	+
GWHAAZE00000005	exon	4591797	4591976	+
GWHAAZE00000005	exon	4594006	4594167	+
GWHAAZE00000005	exon	4594319	4594473	+
GWHAAZE00000005	exon	4596402	4596494	+
GWHAAZE00000005	exon	4596782	4596867	+
GWHAAZE00000005	exon	4596987	4597213	+
GWHAAZE00000005	exon	4597618	4598000	+
GWHAAZE00000005	CDS	4590520	4590575	+
GWHAAZE00000005	CDS	4590691	4590956	+
GWHAAZE00000005	CDS	4591797	4591976	+
GWHAAZE00000005	CDS	4594006	4594167	+
GWHAAZE00000005	CDS	4594319	4594473	+
GWHAAZE00000005	CDS	4596402	4596494	+
GWHAAZE00000005	CDS	4596782	4596867	+
GWHAAZE00000005	CDS	4596987	4597213	+
GWHAAZE00000005	CDS	4597618	4598000	+

Transcript Sequence
>GWHTAAZE017354 ATGAGCCGATACGACAGCCGCTCAGGCGATCCCGGTTCGTATCGTGACCGAAGAAGTGACTCGGGATTTGGAGGGGGTTCGGGCAATGGTGGATTTCGTTCATCGTCGAGCAAGAGAGTCGACTACGACGGTGCACAGTCACCACGCAAGTTTGATTTGGAAGGGTTAATTCCGTTCGAGAAAAACTTCTACGTTGAGTCTCCTGCTATTTCGGCAATGACAGAGACCGAGGTTGAGGAGTATAGGCAACGCCGAGAAATCACCGTTGAAGGTAGAGAAGTTCCTAAGCCGGTTAAGACCTTCCGCGACGTTAGGTTTCCAGATTATGTGATGCAAGAAATCGTAAAAGCTGGCTTTGCTGAACCTACGGCTATTCAAGCTCAAGGATGGCCAATGGCTTTGAAAGGTCGCGATCTCATTGGCATTGCGGAAACAGGTTCAGGGAAGACACTTGCCTATCTATTGCCTGCAATTGTTCATGTCAATGCACAGCCAATTTTAGCTTCTGGAGATGGCCCAATAGTGTTGGTGTTAGCTCCAACTCGTGAGCTTGCTGTTCAAATACAACAAGAAGCTACTAAATTTGGTGCATCATCAAGGATTAAGAATACCTGCATATATGGTGGGGTCCCAAAGGGACCTCAAGTTCGTGATCTTCAGAAAGGTGTTGAAATCGTTATTGCTACTCCGGGAAGGCTAATTGATATGTTGGAATCTCATCACACGAACTTGCGAAGAGTGACATACCTTGTGTTGGATGAGGCGGATCGGATGCTAGACATGGGATTTGAACCACAGATCCAAAAAATTGTATCTCAGATTCGTCCAGATCGTCAAACTCTGTACTGGAGTGCTACGTGGCCCAAGGAGGTTGAACAACTTGCAAGGAGTTTCCTTTACAACCCTTACAAAGTGGTTATTGGTTCTCCAGATTTGAAGGCTAACCATGCAATTCGCCAGCATGTGGATATTGTTTCTGAGAATCAAAAATATAATAAATTGGTGAAGTTGCTAGAGGATATTATGGATGGTAGCCGGATTCTGATATTTATGGACACCAAAAAGGGATGTGACCAAATCACTAGGCAGCTTCGAATGGATGGTTGGCCTGCACTATCTATTCATGGAGATAAGAGTCAAGCAGAAAGAGATTGGGTCCTTTCAGAATTCAAAGCGGGAAAGAGTCCCATAATGACTGCAACAGATGTTGCTGCTCGTGGGTTGGATGTGAAGGATGTTAAATATGTGATCAACTATGATTTTCCGGGATCCCTCGAGGATTATGTTCATCGCATTGGTAGGACAGGAAGGGCTGGAGCCAAAGGAACAGCATATACTTTCTTTACTGCTGCAAATGCCAGATTTGCTAAAGAGCTCATCAGCATCCTTGAGGAGGCTGGACAGAAGGTCAGTCCTGAGCTTTCGAAAATGGGGCGTGGTGCACCTCCTCCCCCATCAGGTCAGTTGACTCTCGAGTACACGTGTTTCTTTTCAATTTTATGTGGGAACCTTACTTGGCACCATAGGTCAGAAATTAGACAAAGTTTGGACCTAATCCAGTTTGGTGGTTGCTATGTTGGAACTTCGTCTCCCATCAAACTGGAGTGA

Network for GWHGAAZE017334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	123	294	4.60E-50
PF00271.32	Helicase_C	330	439	5.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.872
	SRR3591706	second leaf	13.420
	SRR3591707	mature leaf	15.670
	SRR3591708	Shoot apex	32.095
	SRR3591709	Stem	22.838
	SRR3591710	White floral bud	15.655
	SRR3591711	White flower	16.412
	SRR3591712	Green floral bud	19.481
	SRR3591713	Yellow flower	28.272
SRP173429	SRR8316895	Juvenile bud stage	18.454
	SRR8316896	Juvenile bud stage	27.428
	SRR8316897	Juvenile bud stage	10.785
	SRR8316894	Third green stage	10.352
	SRR8316900	Third green stage	28.292
	SRR8316901	Third green stage	25.627
	SRR8316898	Complete white stage	8.586
	SRR8316899	Complete white stage	39.868
	SRR8316903	Complete white stage	15.922
	SRR8316902	Silver flowering stage	9.567
	SRR8316904	Silver flowering stage	14.789
	SRR8316905	Silver flowering stage	6.820
	SRR8316906	Gold flowering stage	27.514
	SRR8316907	Gold flowering stage	26.673
	SRR8316908	Gold flowering stage	23.187
SRP132670	SRR6706286	Control	19.761
	SRR6706287	Light intensity 50%	20.211
	SRR6706288	Light intensity 20%	24.642
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.973
	CNS0095593	Slightly white alabastrum(diploid) 2	21.205
	CNS0095594	Slightly white alabastrum(diploid) 3	16.929
	CNS0095595	Whole white alabastrum(diploid) 2	15.232
	CNS0095596	Whole white alabastrum(diploid) 3	15.294
	CNS0095597	Whole white alabastrum(diploid) 4	10.824
	CNS0095598	Silvery flower (diploied) 1	24.748
	CNS0095599	Silvery flower (diploied) 2	16.309
	CNS0095600	Silvery flower (diploied) 3	26.479
	CNS0095601	Golden flower (diploid) 1	28.173
	CNS0095602	Golden flower (diploid) 2	35.379
	CNS0095603	Golden flower (diploid) 3	34.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.555
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.665
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.422
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.395
	CNS0095610	Silvery flower (tetraploid) 1	20.422
	CNS0095611	Silvery flower (tetraploid) 2	30.552
	CNS0095612	Silvery flower (tetraploid) 3	19.176
	CNS0095613	Golden flower (tetraploid) 1	19.595
	CNS0095614	Golden flower (tetraploid) 2	27.327
	CNS0095615	Golden flower (tetraploid) 3	38.637
CRA001975	CRR073297	Stem 1	27.313
	CRR073298	Stem 2	22.681
	CRR073299	Stem 3	28.109
	CRR073300	Leaf 1	26.352
	CRR073301	Leaf 2	22.399
	CRR073302	Leaf 3	22.715
	CRR073303	Juvenile bud 1	20.896
	CRR073304	Juvenile bud 2	14.544
	CRR073305	Juvenile bud 3	25.400
	CRR073306	Third green 1	7.134
	CRR073307	Third green 2	5.758
	CRR073308	Third green 3	6.154
	CRR073309	Second white 1	11.782
	CRR073310	Second white 2	14.873
	CRR073311	Second white 3	13.358
	CRR073312	Silver flowering 1	11.361
	CRR073313	Silver flowering 2	10.208
	CRR073314	Silver flowering 3	8.466
	CRR073315	Gold flowering 1	12.257
	CRR073316	Gold flowering 2	16.413
	CRR073317	Gold flowering 3	14.831
	CRR073318	Tawny withering 1	24.429
	CRR073319	Tawny withering 2	16.977
	CRR073320	Tawny withering 3	24.232