Gene detail

Detail information of GWHGAAZE017330

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010033784.1	PREDICTED: WD-40 repeat-containing protein MSI4-like [Eucalyptus grandis]
Swissprot	tr\|O22607\|MSI4_ARATH	WD-40 repeat-containing protein MSI4
trEMBL	tr\|A0A059AJK8\|A0A059AJK8_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW53595.1}
TAIR10	AT2G19520.1	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4526077	4536647	+
GWHAAZE00000005	mRNA	4526077	4536647	+
GWHAAZE00000005	exon	4526077	4526232	+
GWHAAZE00000005	exon	4526880	4526926	+
GWHAAZE00000005	exon	4527190	4527253	+
GWHAAZE00000005	exon	4527996	4528082	+
GWHAAZE00000005	exon	4528181	4528243	+
GWHAAZE00000005	exon	4529514	4529586	+
GWHAAZE00000005	exon	4529672	4529784	+
GWHAAZE00000005	exon	4529950	4530025	+
GWHAAZE00000005	exon	4530329	4530545	+
GWHAAZE00000005	exon	4530929	4531010	+
GWHAAZE00000005	exon	4533135	4533208	+
GWHAAZE00000005	exon	4533402	4533513	+
GWHAAZE00000005	exon	4533631	4533705	+
GWHAAZE00000005	exon	4534016	4534092	+
GWHAAZE00000005	exon	4536016	4536115	+
GWHAAZE00000005	exon	4536546	4536647	+
GWHAAZE00000005	CDS	4526077	4526232	+
GWHAAZE00000005	CDS	4526880	4526926	+
GWHAAZE00000005	CDS	4527190	4527253	+
GWHAAZE00000005	CDS	4527996	4528082	+
GWHAAZE00000005	CDS	4528181	4528243	+
GWHAAZE00000005	CDS	4529514	4529586	+
GWHAAZE00000005	CDS	4529672	4529784	+
GWHAAZE00000005	CDS	4529950	4530025	+
GWHAAZE00000005	CDS	4530329	4530545	+
GWHAAZE00000005	CDS	4530929	4531010	+
GWHAAZE00000005	CDS	4533135	4533208	+
GWHAAZE00000005	CDS	4533402	4533513	+
GWHAAZE00000005	CDS	4533631	4533705	+
GWHAAZE00000005	CDS	4534016	4534092	+
GWHAAZE00000005	CDS	4536016	4536115	+
GWHAAZE00000005	CDS	4536546	4536647	+

Transcript Sequence
>GWHTAAZE017350 CTGCAGAGAAGTGAGTGAGTGAGAGAGAAGATGAAGGAGAGAGGGGGCAAACCATCGGTGGACGAGCTTTACACACAGTGGAAATCCCTCGTCCCCGTCCTCTACGACTGGCTCGCTAATCACAATCTCGTTTGGCCATCTCTCTCTTGCCGGTCCGATTATGCTGACTCATTAGTGTCCATCGCTATCTCTGTTGTTAACATATGGGGGCCTCAACTAGAGCAAGCAACTTACAAGAGTCGTCAGCGTCTTTACCTTTCCGAACAGACTGATGGCAGTGTTCCAAATACGCTTGTAATAGCAAACTGTGAAATTGTAAAACCTAGGGTTGCTGCAGCTGAACACATATCACAGTTCAATGAAGAAGCGCGTTCTCCATTTGTAAAGAAGTTTAAAACCATTATACATCCTGGAGAGGTGAATCGAATCAGGGAACTTCCGCAGAATAGCAAGATAGTGGCTACACACACCGACAGTCCTGATGTATGCAAAAGCCATATGTGCCCTAAAGTTCAAGAAATGTTTCAGGTTTTAATTTGGGATGTTGAAACTCAGCCTAATCGTCATGCTGTCTTGGGAGCATCAGAATCCCGTCCTGATTTGATATTGACTGGACATGAAGATAATGCGGAATTCGCTCTTGCAATGTGCCCGATTGAACCCTTTGTGCTCTCTGGAGGGAAGGACAAGTCCGTAGTCTTGTGGAGTATTCATGATCATATCTCTAGTTTGGCCACAGAGCCAGGGGCCACAAAGTCTCCGGGATCTGGTGCGGCCAAGACCCCCAAGGGTAGTGGGAGTGATGAAAAACCTCTGGACGGTCCTTCCATTCAAGCACGAGGTATTTTCAAAGGGCACGGGGATACTGTTGAAGACGTGCAGTTCTGCCCCTCAAGTGCCCAAGAGTTCTGCAGTGTTGGGGATGATTCTTGCCTTATTCTGTGGGATGCAAGAACTGGCTCTACTCCAGCCATCAAGGTTGAGAAAGCTCACAATGCCGATCTTCACTGTGTTGATTGGAATCCCCATGACACAAACTTCATACTAACTGGGTCAGCCGATAATTCGGTTCGAATGTTTGACCGCCGGAACCTCACTTCTGGGGGAGTTGGATCCCCGGTCCACATATTTGAGGGTCACAGTGCTGCTGTCCTTTGTGTTCAGTGGTCTCCAGACAAGTCCTCCGTCTTTGGAAGCTCTGCAGAGGATGGCATCTTGAACATCTGGGATTATGAAAAGATTAGTAAAAAGCAAGACCTTGCTGGAAAATCTCCTGATTCACCCCCAGGTCTATTCTTCCGACATTCTGGGCACAGGGATAAGGTGGTTGACTTCCACTGGAATACATCTGATCCGTGGACAATAGTTAGCGTGTCTGATGATTGTGAAAGTACTAGCGGGGGTGGTACACTACAGTTATGGAGGATGATAGATCTGATATATAGGCCAGAAGAGGATGTTCTGGATGAGCTGGAGAAAATGGGTTCTCACATACTTGAGTGTGGCCCTTCCCCTTGA

Network for GWHGAAZE017330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12265.9	CAF1C_H4-bd	23	104	2.00E-13
PF00400.33	WD40	201	235	0.098
PF00400.33	WD40	280	315	0.017
PF00400.33	WD40	328	360	0.0035
PF00400.33	WD40	370	409	5.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.632
	SRR3591706	second leaf	16.774
	SRR3591707	mature leaf	8.434
	SRR3591708	Shoot apex	61.631
	SRR3591709	Stem	10.845
	SRR3591710	White floral bud	10.440
	SRR3591711	White flower	11.855
	SRR3591712	Green floral bud	13.706
	SRR3591713	Yellow flower	3.724
SRP173429	SRR8316895	Juvenile bud stage	17.134
	SRR8316896	Juvenile bud stage	18.787
	SRR8316897	Juvenile bud stage	7.495
	SRR8316894	Third green stage	6.333
	SRR8316900	Third green stage	17.776
	SRR8316901	Third green stage	16.002
	SRR8316898	Complete white stage	3.783
	SRR8316899	Complete white stage	22.706
	SRR8316903	Complete white stage	5.508
	SRR8316902	Silver flowering stage	2.531
	SRR8316904	Silver flowering stage	2.170
	SRR8316905	Silver flowering stage	1.246
	SRR8316906	Gold flowering stage	3.717
	SRR8316907	Gold flowering stage	4.182
	SRR8316908	Gold flowering stage	3.224
SRP132670	SRR6706286	Control	12.822
	SRR6706287	Light intensity 50%	14.213
	SRR6706288	Light intensity 20%	16.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.930
	CNS0095593	Slightly white alabastrum(diploid) 2	12.711
	CNS0095594	Slightly white alabastrum(diploid) 3	7.719
	CNS0095595	Whole white alabastrum(diploid) 2	9.110
	CNS0095596	Whole white alabastrum(diploid) 3	7.187
	CNS0095597	Whole white alabastrum(diploid) 4	7.911
	CNS0095598	Silvery flower (diploied) 1	12.281
	CNS0095599	Silvery flower (diploied) 2	14.177
	CNS0095600	Silvery flower (diploied) 3	9.900
	CNS0095601	Golden flower (diploid) 1	10.745
	CNS0095602	Golden flower (diploid) 2	9.645
	CNS0095603	Golden flower (diploid) 3	9.007
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.633
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.392
	CNS0095610	Silvery flower (tetraploid) 1	6.634
	CNS0095611	Silvery flower (tetraploid) 2	7.889
	CNS0095612	Silvery flower (tetraploid) 3	4.117
	CNS0095613	Golden flower (tetraploid) 1	2.398
	CNS0095614	Golden flower (tetraploid) 2	3.987
	CNS0095615	Golden flower (tetraploid) 3	1.716
CRA001975	CRR073297	Stem 1	26.276
	CRR073298	Stem 2	22.943
	CRR073299	Stem 3	30.509
	CRR073300	Leaf 1	21.079
	CRR073301	Leaf 2	20.317
	CRR073302	Leaf 3	21.242
	CRR073303	Juvenile bud 1	17.440
	CRR073304	Juvenile bud 2	12.881
	CRR073305	Juvenile bud 3	18.047
	CRR073306	Third green 1	1.383
	CRR073307	Third green 2	2.625
	CRR073308	Third green 3	1.410
	CRR073309	Second white 1	2.034
	CRR073310	Second white 2	1.746
	CRR073311	Second white 3	2.005
	CRR073312	Silver flowering 1	0.981
	CRR073313	Silver flowering 2	1.213
	CRR073314	Silver flowering 3	2.940
	CRR073315	Gold flowering 1	16.065
	CRR073316	Gold flowering 2	21.660
	CRR073317	Gold flowering 3	18.151
	CRR073318	Tawny withering 1	22.964
	CRR073319	Tawny withering 2	16.707
	CRR073320	Tawny withering 3	18.306