Gene detail

Detail information of GWHGAAZE017328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009600672.1	0	PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9S746\|HTH_ARATH	2E-180	Protein HOTHEAD (Precursor)
trEMBL	tr\|A0A068TRB7\|A0A068TRB7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97913.1}
TAIR10	AT1G72970.1	4E-141	Glucose-methanol-choline (GMC) oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4479751	4482204	-
GWHAAZE00000005	mRNA	4479751	4482204	-
GWHAAZE00000005	exon	4479751	4479805	-
GWHAAZE00000005	exon	4480407	4480786	-
GWHAAZE00000005	exon	4481146	4481531	-
GWHAAZE00000005	exon	4481790	4482100	-
GWHAAZE00000005	exon	4482194	4482204	-
GWHAAZE00000005	CDS	4482194	4482204	-
GWHAAZE00000005	CDS	4481790	4482100	-
GWHAAZE00000005	CDS	4481146	4481531	-
GWHAAZE00000005	CDS	4480407	4480786	-
GWHAAZE00000005	CDS	4479751	4479805	-

Transcript Sequence
>GWHTAAZE017348 ATGCCATACCATGATATCAGGAGAGTAGGATGGGATGCTAAACTGGTGAACGAATCATACCCATGGATTGAGAAACAAATCGTTCACCGGCCTGACCTTGCACCATGGCAGATAGCGTTTAGGGACGGCCTTTTGGAAGTCGGGGTCTCTCCTTTTAATGGATTCACCTATGATCACTTGTACGGAACCAAAGTCGGCGGAACCATTTTTGACAAGTATGGTCGCCGCCATACTGCTGCTGAACTGCTTGCCTCCTCAAACCCTCAAAATCTTAATGTCTTAATTCACGCAACTGTTAAAAAAATTGTATTTGATACAAAAGGGAAGAAACCAAGGGCTGTTGGAGTCATCTTTAAAGATGAAAATGGGGATGAACATCAAGCGTTTCTTCGAAAGAGGAAGAGAAGTGAGGTTATAGTCTCGTCTGGAGCAATTGGGAGCCCTCAGCTGCTACTACTCAGTGGGATAGGGCCGAAAAACGACCTTAAAAAGTTGAATATATCTGTAGTTCTTGACAATGAATTTGTTGGCGAAGGCATGTCCGACAACCCTTTGAATACCATGTTTGTTCCCACAAATAGGCCAGTGGAGCAGTCGTTAATTCAAACCGTTGGGATTACAAAGATGGGTGTTTATATCGAGGCTAGCAGCGGATTCGGGCAATCCAAGGATAGTATTCACTGCAATCATGGTATTATGTCAGCTGAGATTGGGCAGCTCTCCACAATTCCTCCAAAGCAAAGAACAAAAGAAGCCATTGAAGCATACAGAAGAAGCAAGAGAAACCTTCCACATGAAGCATTCATGGGAGGTTTCATTCTAGAAAAGATTGCCAGCCCATTGTCAAAGGGGCAGCTCAAACTTATCAACACCAATGTTGATGATAATCCTTCTGTTACTTTCAATTACTTTGACCATCCTCGCGATCTAGAGCGGTGTGTTAATGGGATACGAGTCGTGGAGAAGCTTGTGAGGTCAAAACACTTTACCAACTTCACACAGTGTGACAAAGAAACTGTGGACAAGCTGCTTAACCTGAGTGTCGCGGCTAATGTTAACCTTATACCCAAACAGACTAATGATTCAAAGTACATGGGAGTGAAGATTCTGAGACACAGGCTAGGAGAAGCAGCTGGTTTATAA

Network for GWHGAAZE017328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00732.20	GMC_oxred_N	59	184	1.10E-22
PF05199.14	GMC_oxred_C	280	336	2.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15403	ACE, HTH	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.493
	SRR3591706	second leaf	15.294
	SRR3591707	mature leaf	4.015
	SRR3591708	Shoot apex	47.473
	SRR3591709	Stem	1.216
	SRR3591710	White floral bud	2.145
	SRR3591711	White flower	2.160
	SRR3591712	Green floral bud	1.360
	SRR3591713	Yellow flower	0.236
SRP173429	SRR8316895	Juvenile bud stage	1.755
	SRR8316896	Juvenile bud stage	2.357
	SRR8316897	Juvenile bud stage	0.832
	SRR8316894	Third green stage	0.342
	SRR8316900	Third green stage	0.128
	SRR8316901	Third green stage	0.363
	SRR8316898	Complete white stage	0.106
	SRR8316899	Complete white stage	2.376
	SRR8316903	Complete white stage	0.293
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.002
SRP132670	SRR6706286	Control	0.318
	SRR6706287	Light intensity 50%	0.481
	SRR6706288	Light intensity 20%	0.552
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.668
	CNS0095593	Slightly white alabastrum(diploid) 2	1.709
	CNS0095594	Slightly white alabastrum(diploid) 3	1.685
	CNS0095595	Whole white alabastrum(diploid) 2	0.912
	CNS0095596	Whole white alabastrum(diploid) 3	0.527
	CNS0095597	Whole white alabastrum(diploid) 4	1.145
	CNS0095598	Silvery flower (diploied) 1	1.518
	CNS0095599	Silvery flower (diploied) 2	0.397
	CNS0095600	Silvery flower (diploied) 3	0.216
	CNS0095601	Golden flower (diploid) 1	1.357
	CNS0095602	Golden flower (diploid) 2	0.847
	CNS0095603	Golden flower (diploid) 3	0.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.237
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.379
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.569
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.462
	CNS0095610	Silvery flower (tetraploid) 1	0.094
	CNS0095611	Silvery flower (tetraploid) 2	0.693
	CNS0095612	Silvery flower (tetraploid) 3	0.232
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.328
	CRR073298	Stem 2	1.789
	CRR073299	Stem 3	1.242
	CRR073300	Leaf 1	0.516
	CRR073301	Leaf 2	0.347
	CRR073302	Leaf 3	0.063
	CRR073303	Juvenile bud 1	0.343
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.087
	CRR073306	Third green 1	0.002
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.066
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.007
	CRR073315	Gold flowering 1	1.820
	CRR073316	Gold flowering 2	1.476
	CRR073317	Gold flowering 3	1.584
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.122
	CRR073320	Tawny withering 3	0.027