Gene detail

Detail information of GWHGAAZE017327

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654526.1	0	PREDICTED: receptor-like serine/threonine-protein kinase ALE2 [Vitis vinifera]
Swissprot	tr\|Q8RWW0\|ALE2_ARATH	6E-85	Receptor-like serine/threonine-protein kinase ALE2 (Precursor)
trEMBL	tr\|F6HY19\|F6HY19_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59342.1}
TAIR10	AT5G56890.1	4E-102	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4474511	4478681	+
GWHAAZE00000005	mRNA	4474511	4478681	+
GWHAAZE00000005	exon	4474511	4474676	+
GWHAAZE00000005	exon	4474764	4474865	+
GWHAAZE00000005	exon	4475636	4475785	+
GWHAAZE00000005	exon	4475896	4475997	+
GWHAAZE00000005	exon	4476095	4476199	+
GWHAAZE00000005	exon	4476275	4476646	+
GWHAAZE00000005	exon	4476829	4477122	+
GWHAAZE00000005	exon	4477220	4477612	+
GWHAAZE00000005	exon	4478176	4478681	+
GWHAAZE00000005	five_prime_UTR	4474511	4474676	+
GWHAAZE00000005	five_prime_UTR	4474764	4474786	+
GWHAAZE00000005	CDS	4474787	4474865	+
GWHAAZE00000005	CDS	4475636	4475785	+
GWHAAZE00000005	CDS	4475896	4475997	+
GWHAAZE00000005	CDS	4476095	4476199	+
GWHAAZE00000005	CDS	4476275	4476646	+
GWHAAZE00000005	CDS	4476829	4477122	+
GWHAAZE00000005	CDS	4477220	4477612	+
GWHAAZE00000005	CDS	4478176	4478681	+

Transcript Sequence
>GWHTAAZE017347 CTTAAAAAAGGCTCTGCACATTTTAGGGCTTACCCTCAAGAAAAGAACAACACGTGGCCTATTTCCACCTAACTCATTCTTCTTCTTTTTCCTCACTGACTGATACTATATGTGGCTCTGTGATCTGAAATACTACTTGTCTCTTTGTTGTTGTTCTTCCTTTAAGGGATCAACAATCTTTGAGGTTTCATGATGGGGTTGCAGTTGATTCTCTTGTTGATTACATTCTTAACAATTGACGGTGCTCGCTCTGTTCATGGGTATGCAGGTCCTCCATTACAGTCCAAACAGCTACGAGGTTCTGCACCTTCACCTTCAGTCCCCTTCTATAAACATCATCATAATGCAAGGAAGAAATTCGGCAACTCTGCCCCGAAGTCATCTTATCAGCTTCATCCACCTACTTACAGCCAGCAAGGTTTAGGCCCCTCCCCCTTTTATTCTTCCCGGCCTTTATCAAAGAACTGGGGTTCACCTGCTCCTGCTCCATCACCAACAATTCCATCAAGACAATATAAAGTGCCTATGCCTTCACCTACAATTTCTCCATTGAGCTCTTCCACCAATACGAAGACTTTACCACCCTCATCAGTTTGGACGCTACCACCTCCTCCTCCTAATCAAGATTGTACATCACTAACATGCACAGAGCCATTGACATATACGCCGGCGGGATTGCCCTGTGATTGTGTGTGGCCTATTCAAGTTAGACTAAGCATTGACGTGGCCCTATACACGTTTTTTCCTTTGGTTACGGAGCTAGCTAAGGAAATTGCAGCTGGTCTTTCTCTAAACCAAAGTCAAGTTCGAATTATGGGAGCCAATGCAGCTAGCCAGGATCTACAGAAAACAGTTGTCCTCATCAACTTGGTACCACTACAAGAAAATTTTGATCCCACTACTGCATTTTCAATCTACAAAAAGTTCTGGAAGAGGGAGGTGTTCATAGAGACTTCTCTATTTGGAGACCACGAGACATTGTATGTTCGATACCCAGGTCTTCCACCCTCTCCACCTTCAATGCCCTCGAGCACCACCACCGTAGATAATCCGGCGTATCCCGGGAGTGACAATGATGGAATGTCGGTAAAACCTCTAGGGGTTGATGTGCCAAGGAGAAAAAAAGATTGGACAAGTGGAAGAATGACCGTTGTAGTTGTTCTATCATCTGTCACAGCTTTTGTAATTTGCATCGGAGTTCTTTGGATTTTGTTGTTAAAATGCGGATGTTCCATGTGTCAAACCAAAGAAAATCCTCATGTTCTGATGTCGTCTCATAAAAAAGCACCAGGTTCTACCAGATCTTTGACGTATGGAAGTAGGGCTAGTTCAGCATCAATGTCCTTCAGTTCTAGCCTTTTGGCATACACGGGAACCGCCAAGGTTTTTTGCCTTACAGATGTAGAAAGAGCCACGGATAACTTTGATACTTCAAGAATTCTTGGAGAAGGTGGTTTTGGGCTCGTTTACAGTGGTGTTCTTGATGATGGAAGGAAGGTAGCCGTTAAGGTTCTAAAGAGAGATGATCAACAGGGTAGCCGCGAGTTTTTAGCAGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAACCTAGTAAAATTGTTTGGTATCTGCACAGAGGACCATTGCCGATGCCTTATTTATGAACTTGTTCCCAACGGAAGTGTGGAATCTCATCTACATGGGCAAGAAAATCTGGTTTCTTGGACACATCCTCTCCTCACAACAAAAGAAGGTTTAGAATCGATAGTTGACCCAACTTTGAAGTCAAACATCCCGTTTGATAGTTTGGTCAAAGTAGCAGCAATAGCATCGATGTGCGTGCAGCCAGAAGTATCCCACCGTCCTTTTATGGGCGAAGTTGTTCAAGCCTTGAAGCTTGTGTGCAATGATTTTGATGAGATAAAAGAGCCTATAATATCAAGAAGTTGCAGTCGAGAGGAATCTACTATTGAAATAAATAAGCGTACTAGATATTCAGGTGAGATTGTTGAATCCTCCTCACGGATCAACACTAAGAAGCCGTTGAAGTGTCTATCGGTTGGAATTGAAGAAGAGGAGTATGGATTGTCTAGGAGGCAATATAATTCCGCTCCATTGAAAAGAGGGAAGAGAATGATGTTGTGGCAATATTTAAGGGGAATGCCTAGAGGCAGCATTAGTGAGAATATAGGTTTTCAATTGAAATAA

Network for GWHGAAZE017327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	415	503	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.078
	SRR3591706	second leaf	17.091
	SRR3591707	mature leaf	4.834
	SRR3591708	Shoot apex	20.892
	SRR3591709	Stem	10.592
	SRR3591710	White floral bud	10.037
	SRR3591711	White flower	6.620
	SRR3591712	Green floral bud	12.184
	SRR3591713	Yellow flower	0.994
SRP173429	SRR8316895	Juvenile bud stage	9.082
	SRR8316896	Juvenile bud stage	9.706
	SRR8316897	Juvenile bud stage	4.409
	SRR8316894	Third green stage	3.735
	SRR8316900	Third green stage	5.390
	SRR8316901	Third green stage	8.348
	SRR8316898	Complete white stage	1.399
	SRR8316899	Complete white stage	7.556
	SRR8316903	Complete white stage	2.857
	SRR8316902	Silver flowering stage	0.303
	SRR8316904	Silver flowering stage	0.936
	SRR8316905	Silver flowering stage	0.500
	SRR8316906	Gold flowering stage	1.418
	SRR8316907	Gold flowering stage	0.725
	SRR8316908	Gold flowering stage	1.239
SRP132670	SRR6706286	Control	5.643
	SRR6706287	Light intensity 50%	6.766
	SRR6706288	Light intensity 20%	7.359
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.292
	CNS0095593	Slightly white alabastrum(diploid) 2	5.987
	CNS0095594	Slightly white alabastrum(diploid) 3	6.188
	CNS0095595	Whole white alabastrum(diploid) 2	4.429
	CNS0095596	Whole white alabastrum(diploid) 3	2.050
	CNS0095597	Whole white alabastrum(diploid) 4	3.406
	CNS0095598	Silvery flower (diploied) 1	5.201
	CNS0095599	Silvery flower (diploied) 2	5.006
	CNS0095600	Silvery flower (diploied) 3	2.657
	CNS0095601	Golden flower (diploid) 1	3.465
	CNS0095602	Golden flower (diploid) 2	2.652
	CNS0095603	Golden flower (diploid) 3	1.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.403
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.972
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.895
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.232
	CNS0095610	Silvery flower (tetraploid) 1	1.403
	CNS0095611	Silvery flower (tetraploid) 2	2.417
	CNS0095612	Silvery flower (tetraploid) 3	1.725
	CNS0095613	Golden flower (tetraploid) 1	0.623
	CNS0095614	Golden flower (tetraploid) 2	1.786
	CNS0095615	Golden flower (tetraploid) 3	0.501
CRA001975	CRR073297	Stem 1	15.509
	CRR073298	Stem 2	12.748
	CRR073299	Stem 3	14.700
	CRR073300	Leaf 1	8.621
	CRR073301	Leaf 2	9.060
	CRR073302	Leaf 3	6.408
	CRR073303	Juvenile bud 1	5.253
	CRR073304	Juvenile bud 2	8.088
	CRR073305	Juvenile bud 3	5.890
	CRR073306	Third green 1	0.471
	CRR073307	Third green 2	1.128
	CRR073308	Third green 3	0.889
	CRR073309	Second white 1	0.409
	CRR073310	Second white 2	0.245
	CRR073311	Second white 3	0.381
	CRR073312	Silver flowering 1	0.188
	CRR073313	Silver flowering 2	0.067
	CRR073314	Silver flowering 3	0.400
	CRR073315	Gold flowering 1	4.429
	CRR073316	Gold flowering 2	5.553
	CRR073317	Gold flowering 3	1.876
	CRR073318	Tawny withering 1	8.834
	CRR073319	Tawny withering 2	7.261
	CRR073320	Tawny withering 3	6.988