Gene detail

Detail information of GWHGAAZE017319

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007024498.1	Beta-galactosidase 17 [Theobroma cacao]
Swissprot	tr\|Q93Z24\|BGA17_ARATH	Beta-galactosidase 17 (Precursor)
trEMBL	tr\|A0A061GB64\|A0A061GB64_THECC	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}
TAIR10	AT1G72990.1	beta-galactosidase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4406783	4426781	+
GWHAAZE00000005	mRNA	4406783	4426781	+
GWHAAZE00000005	exon	4406783	4406785	+
GWHAAZE00000005	exon	4406884	4406988	+
GWHAAZE00000005	exon	4407856	4408051	+
GWHAAZE00000005	exon	4409240	4409328	+
GWHAAZE00000005	exon	4409873	4409953	+
GWHAAZE00000005	exon	4410606	4410700	+
GWHAAZE00000005	exon	4411148	4411218	+
GWHAAZE00000005	exon	4411813	4411903	+
GWHAAZE00000005	exon	4411990	4412107	+
GWHAAZE00000005	exon	4412192	4412287	+
GWHAAZE00000005	exon	4412365	4412413	+
GWHAAZE00000005	exon	4415402	4415589	+
GWHAAZE00000005	exon	4415680	4415751	+
GWHAAZE00000005	exon	4416171	4416320	+
GWHAAZE00000005	exon	4416871	4416921	+
GWHAAZE00000005	exon	4424217	4424385	+
GWHAAZE00000005	exon	4424512	4424648	+
GWHAAZE00000005	exon	4424771	4424836	+
GWHAAZE00000005	exon	4426578	4426781	+
GWHAAZE00000005	CDS	4406783	4406785	+
GWHAAZE00000005	CDS	4406884	4406988	+
GWHAAZE00000005	CDS	4407856	4408051	+
GWHAAZE00000005	CDS	4409240	4409328	+
GWHAAZE00000005	CDS	4409873	4409953	+
GWHAAZE00000005	CDS	4410606	4410700	+
GWHAAZE00000005	CDS	4411148	4411218	+
GWHAAZE00000005	CDS	4411813	4411903	+
GWHAAZE00000005	CDS	4411990	4412107	+
GWHAAZE00000005	CDS	4412192	4412287	+
GWHAAZE00000005	CDS	4412365	4412413	+
GWHAAZE00000005	CDS	4415402	4415589	+
GWHAAZE00000005	CDS	4415680	4415751	+
GWHAAZE00000005	CDS	4416171	4416320	+
GWHAAZE00000005	CDS	4416871	4416921	+
GWHAAZE00000005	CDS	4424217	4424385	+
GWHAAZE00000005	CDS	4424512	4424648	+
GWHAAZE00000005	CDS	4424771	4424836	+
GWHAAZE00000005	CDS	4426578	4426781	+

Transcript Sequence
>GWHTAAZE017339 ATGGTTTCTAATCGAAAATTTGGGATTGCGAATGATATGTTCTGGAAGGATGGAGAGCCTTTTCGAATTATTGGTGGGGACCTGCATTACTTTCGAGTTCTTCCTGAGTATTGGGAAGATAGGCTATTGAGGGCAAAGGCACTGGGATTAAATACTATTCAAACTTATGTTCCTTGGAATCTGCATGAACCAAGACAGGGCCAACTGGTTTTTGAGGGTATTGCAGATATAGTTTCATTTCTAGAACTCTGCCAGAAGCTAGATTTCCTCGTAATGCTTCGAGCCGGGCCTTATATATGTGCAGAGTGGGATTTGGGTGGTTTCCCTGCTTGGTTACTTGCCATAGAACCAGTTGTCAGACTAAGATCATCAGACCCTGCTTTCCTTGATTTGGTTGAAAGCTGGTGGGGAATCCTCCTTGCGAAAGCGACTCCTCTTCTTTATAACAATGGAGGACCTATAATCATGGTCCAGATCGAAAACGAATTTGGCTCATATGGAGATGATAAAGCTTATCTTCATCACCTGGTTGGGTTAGCCCGAGGACACCTTGGCAATGACATAATTTTGTATACTACAGATGGAGGTTCTAGGGAAACTCTTGAGAAAGGAACGATAACCGGAGATGCTGTCTATTCAGCCGTTGACTTCACAACTGGGGAAGAACCATGGCCTATATTTGACTTGCAGAAGGAGTTCAATGCACCAGGAAGATCTCCCCCTCTTTCTGCAGAGTTTTATACTGGCTGGCTTACACACTGGGGTGAGGATAATGCAAAGACAGATGCCGATTTTACAGCTGCTGCTCTGAAAAAAATCTTGTCGATGAATGGGTCTGCAGTGCTTTATATGGCCCATGGTGGAACAAACTTCGGATTTTATAGTGGTGCAAATACTGGTGCAAATGAGTCAGAGTACAAGCCCGATCTTACTTCCTATGACTATGATGCACCTATTAGAGAGTCCGGTGATGTCAACAATGCAAAGTTCAGAGCACTGCGCAAGGTTATAAAACAATATGCTGCAGCATCTCTCCCTGCAATTCCTTCTGATAATGAAAAGAAAGGTTTTGGACGTATTCAGTTAGAGAGAACTGCACTTCTGTTTGATATATTTGATTCTAAAGACCAAATTGGCATTATTAATTCTGAAAACCCTATTTCAATGGAAGCTGCAGGCCAGATGTTTGGGTTACTACTATATGTATCTGAGTTCATCAATAAAGGCAACGGAAGTGTTCTGTCCATACCAAAGGTGCATGACAGAGCTCAAGTGTTTGTTTCATGCCCTTCAGGAAAGAATGGAGAAAGACCAACATATATTGGCGCAATTGAGAGATGGTCAAATAGACCCATTGGTCTTCCCAGTGCTAAATGTGCTTCTACCTTTAGATTATTAATTTTGGTTGAAAACATGGGTCGTGTGAATTATGGGGAATATATGTTTGACAGGAAGGGTATTTTATCTTCTGTATATCTTGATGGAATACCCATGCTTAAGTGGAAAATGCTCTCAGTTCCTTTTCACAATCTAAACGAAGCCCAGAAAATGAATCCTATCTTTCAGGATGCATATTCCAGCTTCATTAGAATGTCTGCCCGCAAAAAGTTGAAACATGACTTGGGGTTCATTTCAAAAGAGCCAGCTTTCTATACTGGTGGTTTTGCTGTTGACAATATGAAAGACACTTTCCTATCATTCAGAGGCTGGGGTAAAGGGATTGCTTTTGTCAACAACTTTAATATTGGAAGATATTGGCCGTCCAATGGACCACAGTGCAACCTTTATGTCCCTGCTCCAGTCCTCCACCATGGGAAAAATGTTTTGGACTACTACTTGGAACTGGTGGCATCCTTTTGTTCCGGTTTTCCAGACACAGCTGCGGTTGCTGCGGCCGTCACAGCAGCTGCTGCTGCACCCAGTTTCACACCTCCAGCAGCTTTCATTGCTCCACCAATTTTAGCAAATGCAGCTAAACCTCCTACAAACATAGCCCTCAATGCTACTGTTGGTTTTATCTCCATCTTCTAA

Network for GWHGAAZE017319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01301.20	Glyco_hydro_35	14	339	5.00E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12309	GLB1, ELNR1	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Sphingolipid metabolism	map00600
		Glycosaminoglycan degradation	map00531
		Glycosphingolipid biosynthesis - ganglio series	map00604
		Other glycan degradation	map00511
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565	molecular_function	beta-galactosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.917
	SRR3591706	second leaf	18.115
	SRR3591707	mature leaf	22.509
	SRR3591708	Shoot apex	25.308
	SRR3591709	Stem	29.054
	SRR3591710	White floral bud	19.662
	SRR3591711	White flower	19.190
	SRR3591712	Green floral bud	28.306
	SRR3591713	Yellow flower	13.865
SRP173429	SRR8316895	Juvenile bud stage	14.084
	SRR8316896	Juvenile bud stage	21.738
	SRR8316897	Juvenile bud stage	10.004
	SRR8316894	Third green stage	10.272
	SRR8316900	Third green stage	30.331
	SRR8316901	Third green stage	27.841
	SRR8316898	Complete white stage	12.748
	SRR8316899	Complete white stage	38.016
	SRR8316903	Complete white stage	19.089
	SRR8316902	Silver flowering stage	11.304
	SRR8316904	Silver flowering stage	14.705
	SRR8316905	Silver flowering stage	7.989
	SRR8316906	Gold flowering stage	27.399
	SRR8316907	Gold flowering stage	27.943
	SRR8316908	Gold flowering stage	26.057
SRP132670	SRR6706286	Control	23.010
	SRR6706287	Light intensity 50%	23.651
	SRR6706288	Light intensity 20%	25.671
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.958
	CNS0095593	Slightly white alabastrum(diploid) 2	24.756
	CNS0095594	Slightly white alabastrum(diploid) 3	19.201
	CNS0095595	Whole white alabastrum(diploid) 2	22.239
	CNS0095596	Whole white alabastrum(diploid) 3	22.169
	CNS0095597	Whole white alabastrum(diploid) 4	19.031
	CNS0095598	Silvery flower (diploied) 1	21.287
	CNS0095599	Silvery flower (diploied) 2	20.970
	CNS0095600	Silvery flower (diploied) 3	22.853
	CNS0095601	Golden flower (diploid) 1	23.767
	CNS0095602	Golden flower (diploid) 2	25.570
	CNS0095603	Golden flower (diploid) 3	25.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.631
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.418
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.005
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.930
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.036
	CNS0095610	Silvery flower (tetraploid) 1	18.763
	CNS0095611	Silvery flower (tetraploid) 2	23.773
	CNS0095612	Silvery flower (tetraploid) 3	25.515
	CNS0095613	Golden flower (tetraploid) 1	13.684
	CNS0095614	Golden flower (tetraploid) 2	20.392
	CNS0095615	Golden flower (tetraploid) 3	12.824
CRA001975	CRR073297	Stem 1	15.650
	CRR073298	Stem 2	16.809
	CRR073299	Stem 3	16.632
	CRR073300	Leaf 1	21.468
	CRR073301	Leaf 2	22.421
	CRR073302	Leaf 3	21.033
	CRR073303	Juvenile bud 1	20.958
	CRR073304	Juvenile bud 2	21.739
	CRR073305	Juvenile bud 3	23.462
	CRR073306	Third green 1	17.274
	CRR073307	Third green 2	17.253
	CRR073308	Third green 3	13.184
	CRR073309	Second white 1	21.941
	CRR073310	Second white 2	13.333
	CRR073311	Second white 3	9.142
	CRR073312	Silver flowering 1	9.519
	CRR073313	Silver flowering 2	14.374
	CRR073314	Silver flowering 3	7.456
	CRR073315	Gold flowering 1	6.041
	CRR073316	Gold flowering 2	9.264
	CRR073317	Gold flowering 3	9.498
	CRR073318	Tawny withering 1	13.678
	CRR073319	Tawny withering 2	13.201
	CRR073320	Tawny withering 3	10.337