Gene detail

Detail information of GWHGAAZE017314

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97901.1	5.10741E-95	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8W034\|RNP1_ARATH	2E-50	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|A0A068TNT8\|A0A068TNT8_COFCA	2E-95	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97901.1}
TAIR10	AT1G17640.1	1E-61	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4353802	4356384	-
GWHAAZE00000005	mRNA	4353802	4356384	-
GWHAAZE00000005	exon	4356182	4356384	-
GWHAAZE00000005	exon	4354641	4354911	-
GWHAAZE00000005	exon	4354399	4354507	-
GWHAAZE00000005	exon	4354151	4354320	-
GWHAAZE00000005	exon	4353802	4354074	-
GWHAAZE00000005	CDS	4356182	4356384	-
GWHAAZE00000005	CDS	4354641	4354911	-
GWHAAZE00000005	CDS	4354399	4354507	-
GWHAAZE00000005	CDS	4354151	4354320	-
GWHAAZE00000005	CDS	4353802	4354074	-

Transcript Sequence
>GWHTAAZE017334 ATGGATGATGATGCTGCAGGAGGACAAATAAACGCCGTTAATGGCGAAGACGAACAACAACAACAGCAGTTTGAAGATCAAATTCAACTGCAGATTTCTTCTGAAGAACAATATGATAACCTAGATGATAGTGCAGGCAATGAGATGATACAACAGCCTCATCATCCCGCCGTCGATGATAATTCCCGTGATTCTTCCGCAGGCAAATGCTATTGTCCTTATCGTAGATTTATTGATTTTGTTTCGATTTTTTTTGAGAGCCGTTTAGCGATTAGTTTTGTCCTTATTGTATATTTGATTTTGTTTACAGAATCATTCAGCAATTACTTTAGCAATTATGGAGAAATCACTGATTCTGTAATAATGATGGATAAACTTTCTGGAAGACCACGAGGATTTGGCTTCGTGACATTTGCTGACGCAGCAGTTGCCGATAAAGTCTTGGAGGAAGAACATGTCATAGATGGTAGATCGGTCGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGCACACGCAGGTTAAAGGAGTTGTAAGAACGAAGAAAATTTTTGTTGGTGGTATACCACTTTCTCTAACTGAAGATGAGTTGAAGGAGTATTTTTCATCTTATGGCAATGTTATGGAGCACCAGATTATGCTTGATCATAAAACCGGCAGATCTAGGGGCTTTGGGTTTGTCACCTTCGACAATGAAGATGCTGTTGAAAAGATATTTTCTCATGGTCAGATACATGAACTCGGAGGCAAACAAGTGGAAATAAAGAGGGCTGAGCCGAAAAGAGCTGGCAGTGATCATGGAAGTGATAGCCGGATGAGGCGTGGTGGTGGTAGTTCAAGGTCGTATGGTGGTGGCTTCGGTAGAGGAGGAGCAGGTTATGGCGGTGGATATAGTGGAAAGATGGGTAGAGGATATGGTGGGCATGGCAACTATGGCGGTTACGATGACTACAGTGGTTATGGTGGAAATTACGGTGGAAGCGCTGCAGGGTTTTATGCTGGCTATGGAGGATATGGTTATGGATTT

Network for GWHGAAZE017314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	106	152	2.10E-08
PF00076.23	RRM_1	183	252	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003729	molecular_function	mRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.904
	SRR3591706	second leaf	23.073
	SRR3591707	mature leaf	23.063
	SRR3591708	Shoot apex	48.802
	SRR3591709	Stem	32.448
	SRR3591710	White floral bud	40.608
	SRR3591711	White flower	52.543
	SRR3591712	Green floral bud	44.876
	SRR3591713	Yellow flower	43.930
SRP173429	SRR8316895	Juvenile bud stage	25.492
	SRR8316896	Juvenile bud stage	36.784
	SRR8316897	Juvenile bud stage	16.149
	SRR8316894	Third green stage	17.855
	SRR8316900	Third green stage	44.994
	SRR8316901	Third green stage	46.600
	SRR8316898	Complete white stage	9.250
	SRR8316899	Complete white stage	33.480
	SRR8316903	Complete white stage	28.096
	SRR8316902	Silver flowering stage	16.321
	SRR8316904	Silver flowering stage	25.514
	SRR8316905	Silver flowering stage	10.991
	SRR8316906	Gold flowering stage	38.411
	SRR8316907	Gold flowering stage	43.103
	SRR8316908	Gold flowering stage	40.132
SRP132670	SRR6706286	Control	57.113
	SRR6706287	Light intensity 50%	55.886
	SRR6706288	Light intensity 20%	55.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.837
	CNS0095593	Slightly white alabastrum(diploid) 2	24.914
	CNS0095594	Slightly white alabastrum(diploid) 3	23.014
	CNS0095595	Whole white alabastrum(diploid) 2	29.003
	CNS0095596	Whole white alabastrum(diploid) 3	22.565
	CNS0095597	Whole white alabastrum(diploid) 4	21.101
	CNS0095598	Silvery flower (diploied) 1	27.058
	CNS0095599	Silvery flower (diploied) 2	18.914
	CNS0095600	Silvery flower (diploied) 3	28.317
	CNS0095601	Golden flower (diploid) 1	22.692
	CNS0095602	Golden flower (diploid) 2	31.116
	CNS0095603	Golden flower (diploid) 3	28.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.980
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.974
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.373
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.626
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.353
	CNS0095610	Silvery flower (tetraploid) 1	36.538
	CNS0095611	Silvery flower (tetraploid) 2	29.517
	CNS0095612	Silvery flower (tetraploid) 3	27.121
	CNS0095613	Golden flower (tetraploid) 1	23.417
	CNS0095614	Golden flower (tetraploid) 2	36.999
	CNS0095615	Golden flower (tetraploid) 3	23.683
CRA001975	CRR073297	Stem 1	30.571
	CRR073298	Stem 2	28.886
	CRR073299	Stem 3	28.162
	CRR073300	Leaf 1	32.576
	CRR073301	Leaf 2	28.655
	CRR073302	Leaf 3	26.500
	CRR073303	Juvenile bud 1	26.781
	CRR073304	Juvenile bud 2	17.065
	CRR073305	Juvenile bud 3	28.181
	CRR073306	Third green 1	11.174
	CRR073307	Third green 2	10.165
	CRR073308	Third green 3	11.424
	CRR073309	Second white 1	14.568
	CRR073310	Second white 2	16.126
	CRR073311	Second white 3	18.711
	CRR073312	Silver flowering 1	11.897
	CRR073313	Silver flowering 2	12.364
	CRR073314	Silver flowering 3	14.862
	CRR073315	Gold flowering 1	14.426
	CRR073316	Gold flowering 2	16.061
	CRR073317	Gold flowering 3	12.123
	CRR073318	Tawny withering 1	24.027
	CRR073319	Tawny withering 2	19.524
	CRR073320	Tawny withering 3	20.303