Gene detail

Detail information of GWHGAAZE017310

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008228267.1	3.0416E-57	PREDICTED: uncharacterized protein LOC103327681 [Prunus mume]
trEMBL	tr\|M5XB86\|M5XB86_PRUPE	4E-56	Ribosomal protein L34 {ECO:0000256\|RuleBase:RU000566}
TAIR10	AT3G13882.1	4E-37	Ribosomal protein L34

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4333065	4335927	-
GWHAAZE00000005	mRNA	4333065	4335927	-
GWHAAZE00000005	exon	4335538	4335927	-
GWHAAZE00000005	exon	4334154	4334253	-
GWHAAZE00000005	exon	4333065	4333535	-
GWHAAZE00000005	five_prime_UTR	4335845	4335927	-
GWHAAZE00000005	CDS	4335538	4335844	-
GWHAAZE00000005	CDS	4334154	4334253	-
GWHAAZE00000005	CDS	4333463	4333535	-
GWHAAZE00000005	three_prime_UTR	4333065	4333462	-

Transcript Sequence
>GWHTAAZE017330 GGAAGGCGTTTTGCCTCGCTCCACTCTAGGGCTAGGGTTTACACACAGAAACACCAGAGGTCTACTGGAAAAAAGAGAAGAAGATGTCGTCAAAAACCTTAATTCGCACCGGAGTTACTTTGATGAACCGCTTCATCAGTAGTCCTCTTATTCAGCATCAGCAGCAGCAGAAACAGGTTTTCAATCATCTTCATCCCATCGCATCCCGGACCCTCGAACTCCTTCCTAAGCTTTTCCCTTCTCCTCCGGTGGCTTCTGTTTCCAAGATTCCGACCTCCTCCCTAAATATCCCCCAAAACGACGATGCTGAAAACATGAAGAGATTGTTGTCATCTGAAGGATTCTTATATCCTTGTGGCCTTCCTTCTCTAAGGTTCTTCCTCCCCGAAGGCGATGAATGTTCATCAATTGAGCCAATGATCTTATTTCCCAAACGAACATATCAACCCAGCAACATCAGGCGTAAAAGGAATCATGGGTTCCTAGCTCGGAAAGCAACCAAGGGTGGACGGAGAGTCATTGCTCGAAGGATTGCCAAGGGTCGGTCAAGAATCACCGCGTAGTGGAAAAAGTATTCATCTACCCAGTTTGAAGCAAATCGGATTCAAGGCTAGAAGGCGTCCTTAGCCTCATGGCATGACCAAACAATAGGAAGAGATGCCTCTTTGGTCTTCTTTTATAAAACTAGCTTTTTAGAGGTCTTTTGGTTTATCGACTTCAAACTTTCAGCACTTCATATACTTCTTTCGTAGATGGTTGTTGGAATTTTCTCACCTGAAATGTTTGTTAGTTTGCTAATAATTGTATTTTGAAACGTTTAACTGATCCCGGAAGTTTCCTCTTCAAAAACTCTCTCTGAGTTATCTCTTGGTGATTTCTTGAGCTTTTATGTTGTATTATGAGTTTGTGTTCTACCAGGTTACAGGTTATCATATATAGAATACTATTAAGATCTGCTTAA

Network for GWHGAAZE017310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00468.18	Ribosomal_L34	117	159	3.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02914	RP-L34, MRPL34, rpmH	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.568
	SRR3591706	second leaf	22.796
	SRR3591707	mature leaf	18.498
	SRR3591708	Shoot apex	43.067
	SRR3591709	Stem	31.179
	SRR3591710	White floral bud	32.502
	SRR3591711	White flower	44.585
	SRR3591712	Green floral bud	39.722
	SRR3591713	Yellow flower	39.378
SRP173429	SRR8316895	Juvenile bud stage	34.853
	SRR8316896	Juvenile bud stage	43.336
	SRR8316897	Juvenile bud stage	24.322
	SRR8316894	Third green stage	16.081
	SRR8316900	Third green stage	47.745
	SRR8316901	Third green stage	48.182
	SRR8316898	Complete white stage	15.877
	SRR8316899	Complete white stage	47.427
	SRR8316903	Complete white stage	26.137
	SRR8316902	Silver flowering stage	19.011
	SRR8316904	Silver flowering stage	19.562
	SRR8316905	Silver flowering stage	7.967
	SRR8316906	Gold flowering stage	32.535
	SRR8316907	Gold flowering stage	32.559
	SRR8316908	Gold flowering stage	30.354
SRP132670	SRR6706286	Control	82.633
	SRR6706287	Light intensity 50%	69.363
	SRR6706288	Light intensity 20%	68.814
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.791
	CNS0095593	Slightly white alabastrum(diploid) 2	37.556
	CNS0095594	Slightly white alabastrum(diploid) 3	47.501
	CNS0095595	Whole white alabastrum(diploid) 2	28.864
	CNS0095596	Whole white alabastrum(diploid) 3	27.777
	CNS0095597	Whole white alabastrum(diploid) 4	24.631
	CNS0095598	Silvery flower (diploied) 1	26.863
	CNS0095599	Silvery flower (diploied) 2	28.543
	CNS0095600	Silvery flower (diploied) 3	40.891
	CNS0095601	Golden flower (diploid) 1	22.937
	CNS0095602	Golden flower (diploid) 2	33.784
	CNS0095603	Golden flower (diploid) 3	34.612
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.251
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.088
	CNS0095610	Silvery flower (tetraploid) 1	36.986
	CNS0095611	Silvery flower (tetraploid) 2	38.196
	CNS0095612	Silvery flower (tetraploid) 3	32.895
	CNS0095613	Golden flower (tetraploid) 1	30.304
	CNS0095614	Golden flower (tetraploid) 2	32.725
	CNS0095615	Golden flower (tetraploid) 3	31.804
CRA001975	CRR073297	Stem 1	36.249
	CRR073298	Stem 2	38.765
	CRR073299	Stem 3	45.482
	CRR073300	Leaf 1	31.462
	CRR073301	Leaf 2	36.337
	CRR073302	Leaf 3	36.326
	CRR073303	Juvenile bud 1	30.416
	CRR073304	Juvenile bud 2	35.680
	CRR073305	Juvenile bud 3	45.434
	CRR073306	Third green 1	13.240
	CRR073307	Third green 2	13.526
	CRR073308	Third green 3	14.566
	CRR073309	Second white 1	20.129
	CRR073310	Second white 2	12.643
	CRR073311	Second white 3	18.713
	CRR073312	Silver flowering 1	13.191
	CRR073313	Silver flowering 2	15.445
	CRR073314	Silver flowering 3	14.056
	CRR073315	Gold flowering 1	15.371
	CRR073316	Gold flowering 2	18.254
	CRR073317	Gold flowering 3	16.345
	CRR073318	Tawny withering 1	26.861
	CRR073319	Tawny withering 2	21.446
	CRR073320	Tawny withering 3	26.964