Gene detail

Detail information of GWHGAAZE017306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080051.1	4.88748E-46	PREDICTED: uncharacterized protein LOC105163419 [Sesamum indicum]
trEMBL	tr\|Q6ZZ86\|Q6ZZ86_CICAR	2E-45	Ribosomal protein L34 {ECO:0000256\|RuleBase:RU000566}
TAIR10	AT3G13882.1	9E-30	Ribosomal protein L34

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4262112	4264961	-
GWHAAZE00000005	mRNA	4262112	4264961	-
GWHAAZE00000005	exon	4264579	4264961	-
GWHAAZE00000005	exon	4263198	4263297	-
GWHAAZE00000005	exon	4262112	4262582	-
GWHAAZE00000005	five_prime_UTR	4264814	4264961	-
GWHAAZE00000005	CDS	4264579	4264813	-
GWHAAZE00000005	CDS	4263198	4263297	-
GWHAAZE00000005	CDS	4262510	4262582	-
GWHAAZE00000005	three_prime_UTR	4262112	4262509	-

Transcript Sequence
>GWHTAAZE017326 GGAAGGCGTTTTGCCTCGCTCCACTCTAGGGCTAGGGTTTACACACAGAAACACCAGAGGTCTACTGGAAAAAGAGAAGATGTCGTCAAAACCTTAATTCGCACCGGAGTTACTTTGATGAACCGCTTCATCAGTAGTCCTCTTATTCAGCATCAGCAGCAGCAGAAACAGGTTTTCAATCATCTTCATCCCATCGCATCCCGGACCCTCGAACTCCTTCCTAAGCTTTCCCTTCTCCTCCGGTGGCTTCTGTTTCCAAGATTCCGACCTCCTCCTAAATATCCCCCAAAACGACGATGCTGAAAACATGAAGAGATTGTTGTCATCTGAAGGATTCTTATATCCTTGTGGCCTTCCTTCTCTAAGGTTCTTCCTCCCCGAAGGCGATGAATGTTCATCAATTGAGCCAATGATCTTATTTCCCAAACGAACATATCAACCCAGCAACATCAGGCGTAAAAGGAATCATGGGTTCCTAGCTCGGAAAGCAACCAAGGGTGGACGGAGAGTCATTGCTCGAAGGATTGCCAAGGGTCGGTCAAGAATCACCGCGTAGTGGAAAAAGTATTCATCTACCCAGTTTGAAGCAAATCGGATTCAAGGCTAGAAGGCGTCCTTAGCCTCATGGCATGACCAAACAATAGGAAGAGATGCCTCTTTGGTCTTCTTTTATAAAACTAGCTTTTTAGAGGTCTTTTGGTTTATCGACTTCAAACTTTCAGCACTTCATATACTTCTTTCGTAGATGGTTGTTGGAATTTTCTCACCTGAAATGTTTGTTAGTTTGCTAATAATTGTATTTTGAAACGTTTAACTGATCCCGGAAGTTTCCTCTTCAAAAACTCTCTCTGAGTTATCTCTTGGTGATTTCTTGAGCTTTTATGTTGTATTATGAGTTTGTGTTCTACCAGGTTACAGGTTATCATATATAGAATACTATTAAGATCTGCTTAA

Network for GWHGAAZE017306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00468.18	Ribosomal_L34	93	135	2.40E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02914	RP-L34, MRPL34, rpmH	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.632
	SRR3591706	second leaf	10.099
	SRR3591707	mature leaf	9.159
	SRR3591708	Shoot apex	19.329
	SRR3591709	Stem	12.901
	SRR3591710	White floral bud	13.090
	SRR3591711	White flower	19.209
	SRR3591712	Green floral bud	18.551
	SRR3591713	Yellow flower	16.051
SRP173429	SRR8316895	Juvenile bud stage	13.292
	SRR8316896	Juvenile bud stage	18.658
	SRR8316897	Juvenile bud stage	9.633
	SRR8316894	Third green stage	6.224
	SRR8316900	Third green stage	18.488
	SRR8316901	Third green stage	18.566
	SRR8316898	Complete white stage	6.160
	SRR8316899	Complete white stage	19.254
	SRR8316903	Complete white stage	9.016
	SRR8316902	Silver flowering stage	7.366
	SRR8316904	Silver flowering stage	7.374
	SRR8316905	Silver flowering stage	4.581
	SRR8316906	Gold flowering stage	9.659
	SRR8316907	Gold flowering stage	9.322
	SRR8316908	Gold flowering stage	17.472
SRP132670	SRR6706286	Control	11.021
	SRR6706287	Light intensity 50%	10.618
	SRR6706288	Light intensity 20%	11.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.717
	CNS0095593	Slightly white alabastrum(diploid) 2	20.254
	CNS0095594	Slightly white alabastrum(diploid) 3	23.045
	CNS0095595	Whole white alabastrum(diploid) 2	14.826
	CNS0095596	Whole white alabastrum(diploid) 3	16.629
	CNS0095597	Whole white alabastrum(diploid) 4	12.757
	CNS0095598	Silvery flower (diploied) 1	14.192
	CNS0095599	Silvery flower (diploied) 2	13.276
	CNS0095600	Silvery flower (diploied) 3	15.828
	CNS0095601	Golden flower (diploid) 1	17.696
	CNS0095602	Golden flower (diploid) 2	13.150
	CNS0095603	Golden flower (diploid) 3	13.448
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.261
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.947
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.793
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.844
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.524
	CNS0095610	Silvery flower (tetraploid) 1	13.459
	CNS0095611	Silvery flower (tetraploid) 2	14.641
	CNS0095612	Silvery flower (tetraploid) 3	12.887
	CNS0095613	Golden flower (tetraploid) 1	15.612
	CNS0095614	Golden flower (tetraploid) 2	14.404
	CNS0095615	Golden flower (tetraploid) 3	11.452
CRA001975	CRR073297	Stem 1	14.641
	CRR073298	Stem 2	12.769
	CRR073299	Stem 3	16.700
	CRR073300	Leaf 1	11.975
	CRR073301	Leaf 2	13.619
	CRR073302	Leaf 3	13.214
	CRR073303	Juvenile bud 1	12.825
	CRR073304	Juvenile bud 2	13.608
	CRR073305	Juvenile bud 3	16.613
	CRR073306	Third green 1	3.725
	CRR073307	Third green 2	4.922
	CRR073308	Third green 3	5.642
	CRR073309	Second white 1	8.344
	CRR073310	Second white 2	6.559
	CRR073311	Second white 3	6.149
	CRR073312	Silver flowering 1	6.391
	CRR073313	Silver flowering 2	6.063
	CRR073314	Silver flowering 3	5.418
	CRR073315	Gold flowering 1	4.699
	CRR073316	Gold flowering 2	7.886
	CRR073317	Gold flowering 3	9.359
	CRR073318	Tawny withering 1	10.768
	CRR073319	Tawny withering 2	10.799
	CRR073320	Tawny withering 3	10.761