Detail information of GWHGAAZE017305


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002274626.13.19253E-56PREDICTED: myb-related protein 305 [Vitis vinifera]
Swissprottr|Q9LXV2|MYB46_ARATH8E-38Transcription factor MYB46
trEMBLtr|F6HXY9|F6HXY9_VITVI1E-56Putative uncharacterized protein {ECO:0000313|EMBL:CCB59312.1}
TAIR10AT3G13890.28E-38myb domain protein 26

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene42411934241886+
GWHAAZE00000005mRNA42411934241886+
GWHAAZE00000005exon42411934241320+
GWHAAZE00000005exon42414784241886+
GWHAAZE00000005CDS42411934241320+
GWHAAZE00000005CDS42414784241886+
Transcript Sequence

Network for GWHGAAZE017305

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding22642.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.204
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.113
SRR3591709Stem0.712
SRR3591710White floral bud0.125
SRR3591711White flower0.000
SRR3591712Green floral bud0.349
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.310
SRR8316896Juvenile bud stage 2.215
SRR8316897Juvenile bud stage 0.082
SRR8316894Third green stage 0.074
SRR8316900Third green stage 0.590
SRR8316901Third green stage 0.478
SRR8316898Complete white stage 0.123
SRR8316899Complete white stage 3.745
SRR8316903Complete white stage 0.929
SRR8316902Silver flowering stage0.051
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.462
SRR6706287Light intensity 50%0.498
SRR6706288Light intensity 20%0.259
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.155
CNS0095593Slightly white alabastrum(diploid) 20.144
CNS0095594Slightly white alabastrum(diploid) 31.055
CNS0095595Whole white alabastrum(diploid) 20.113
CNS0095596Whole white alabastrum(diploid) 30.167
CNS0095597Whole white alabastrum(diploid) 40.036
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.038
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.109
CNS0095605Slightly white alabastrum(tetraploid) 20.289
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.158
CNS0095609Whole white alabastrum(tetraploid) 30.094
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 112.507
CRR073298Stem 24.260
CRR073299Stem 313.962
CRR073300Leaf 10.272
CRR073301Leaf 20.294
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.086
CRR073304Juvenile bud 20.172
CRR073305Juvenile bud 30.751
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000