Gene detail

Detail information of GWHGAAZE017296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654498.1	0	PREDICTED: U-box domain-containing protein 52 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FKG5\|PUB51_ARATH	3E-135	Serine/threonine-protein kinase
trEMBL	tr\|A0A068TPB4\|A0A068TPB4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97882.1}
TAIR10	AT5G12000.1	3E-163	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4066277	4071491	+
GWHAAZE00000005	mRNA	4066277	4071491	+
GWHAAZE00000005	exon	4066277	4066457	+
GWHAAZE00000005	exon	4066957	4067048	+
GWHAAZE00000005	exon	4068256	4068377	+
GWHAAZE00000005	exon	4068619	4068801	+
GWHAAZE00000005	exon	4068940	4069282	+
GWHAAZE00000005	exon	4069490	4069591	+
GWHAAZE00000005	exon	4069704	4070135	+
GWHAAZE00000005	exon	4070467	4071207	+
GWHAAZE00000005	exon	4071291	4071491	+
GWHAAZE00000005	CDS	4066277	4066457	+
GWHAAZE00000005	CDS	4066957	4067048	+
GWHAAZE00000005	CDS	4068256	4068377	+
GWHAAZE00000005	CDS	4068619	4068801	+
GWHAAZE00000005	CDS	4068940	4069282	+
GWHAAZE00000005	CDS	4069490	4069591	+
GWHAAZE00000005	CDS	4069704	4070135	+
GWHAAZE00000005	CDS	4070467	4071207	+
GWHAAZE00000005	CDS	4071291	4071404	+
GWHAAZE00000005	three_prime_UTR	4071405	4071491	+

Transcript Sequence
>GWHTAAZE017316 ATGTCTAATAATAACGAGTCGTCGCGTTCTGGAGAAGGTACAATTATAACCACGGCGGTAGCAATAGATAGAGACAAGAACAGCCAATACGCCGTAAGATGGGCAGTTGAGAACCTCTTGAAGTCCAAGAACGCTTCCATTTTCCTCCTCCATGTCCGCACCACCCAAAACTCTCTACCCCAGGATCTTATCCCTAAAGAAGGTCGAGCACCAACCGAATCTGAATTGCAGCAGTTCTTCCTTCCCTATCGTGGATTTTGTGCTCGAAAAGGGGTCCGAGCAAAGGAGGTGGTCCTCCAGGATATTGATATTCCAAGTGCGCTAGCTGATTTTATCGATAGAAACTCCATCAGCGCTATCGTTGTTGGTGTTTCAAACCGGAGTGCTCTAACAAGGGCATTTAAGAATCCTGATGTACCCACTAGCTTAGGCAGATTTGCACCAGATTTTTGTTCGGTGTATGCTATATCAAAAGGAAAAGTTCAGAATGTCAGATCAGCTAGTAGACTTCCTAGTTCGAGGCAAGCATCTCATTCAGGATATTCATCAGACACCCCTAGCTCTGAAGATTTTAATCGAACTTTTAGCCAGGGGAGTTGGAGAAGTCAAGGTTCCGAGGGTTTATCATTTGATAGAAGCAGTGCTAGAAGCAATGAGAAAGTATCGTTTGATAAGAGCAGCGATTATACGCCAATTGTTCCACCTGACAGGCTCCCTGGCAACAAGAGTCCTTTACTGCTACAGTCGGCGAACAATAATCTTCGGATTCATACCAAAGGCAGTCCAAGTCTAGATTCTGCATCTGATGCCAGTGATTTTTCTGGGCCCCATAGTTTCCAATCGGCTGAAATGTCCTATGAAAATTTAGACCAGCCCCGCACATCAGATGGTTCCAGAAGCTCTCTCTCCTCCCAAAGCCTACAGGAACTAGAGGATGAAATGAGGAGATTAAAACTTGAGTTGAAGCAAACCATGGAAATGTACAACTCAGCTTGCAAAGAAGCATTGAATGCTAAACAGAAGGCAAGAGAGATAGATCAATGGAAATCAGCTGAGGCACGTAAGTTAGAGGAAGCGAAGCAAGCTGAAGAGGCTGCATTGGCTATGGTAGAGATGGAGAAACAGAAGTGTAAAGCTGCCATGGAAGCAGCGCAGATGGCTCAACGTCTAGCGGATCTCGAGTCTCAGAAGAGAAAAAATGCAGAAACCAAGGCTAAGCACGAGGCAGAAGAGAAGAAGAAAGCAATGGATGCATTGGCTCGCACCAACAACATCCGGTACAGAAAATACTCCATTGAAGAAATTGAAGTTGCCACAAATTACTTCGCCACTTCGGCTAAGATTGGTGAAGGAGGTTATGGACCTGTCTATAAAGCCTTTCTTGATCACACTGCTGTCGCCATTAAGGTTTTGAGGCCCGACATTTCGCAAGGGCAGAAGCAATTTCAAAGAGAGGTTGAGGTGCTGAGTTGTATGAGACACCCGAACATGGTTCTGCTTGTGGGAGCGTGCCCTGAATATGGATGCCTCGTATACGAGCACATGGAAAATGGAAGCTTAGAAGACCGTCTCTTTAGGAGACACAACACTCCCCCTATCCCATGGAGAACCCGTTTCAAAATAGCTGCCGAAATTGCCACTGCACTCCTTTTCCTTCATCAAGCAAAACCAGAGCCACTGGTGCACCGTGACCTCAAGCCTGCCAACATTCTCTTGGACCGGAACTTTGTGAGCAAGATCAGCGACGTTGGATTAGCCAGGCTTGTCCCACCCTCTATAGCCGATAGTGTAACCCAATACCACATGACTGCAGCAGCCGGAACATTCTGTTATATTGACCCAGAGTACCAACAAACAGGGATGTTGGGCACAAAATCTGATATATATTCGTTGGGCGTATTGTTTTTACAGGTGATTACCGCTAAACCACCAATGGGCTTAACCCACCAGGTTTCGAGGTCAATTGACAAAGGAACTTTCAGTGAGATGCTCGACCAATCAATAACCGATTGGCCGGTTGAGGAGGCTTTATCATTTGCAAAAATGGTTTTACAATGTTGCGAGCTGAGAAGGAAGGATAGGCCGGATCTAAGTACTGTCATATTGCCTGAACTCATTCGATTAAGAGATCTTGGGTTAGGGAATGGACCCAATTATGGGCATCACGGAAGGAATCCAAATAATCCAAGTTTTGAGGAACCTCGGAGAAGCAACAGTGAGATGCAAGTGGAGATTCAGAGGCGATCAGGGGTAGAAGAAAGCAGCAGCAGCAATTCAAATTCAGCACTTGAAAACTTTATTGAAGGATAGTTCTATAAATGCCCAGTTGGATGGCGGGGAGGTAGAGGGAGGGGATGTGAATTTGTTTAATAAACAAAAGTCCTTTTACTCAAAAAC

Network for GWHGAAZE017296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	20	134	1.40E-11
PF00069.26	Pkinase	444	698	2.60E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.939
	SRR3591706	second leaf	0.177
	SRR3591707	mature leaf	0.329
	SRR3591708	Shoot apex	3.347
	SRR3591709	Stem	2.429
	SRR3591710	White floral bud	68.135
	SRR3591711	White flower	15.204
	SRR3591712	Green floral bud	15.485
	SRR3591713	Yellow flower	8.924
SRP173429	SRR8316895	Juvenile bud stage	6.152
	SRR8316896	Juvenile bud stage	11.026
	SRR8316897	Juvenile bud stage	3.149
	SRR8316894	Third green stage	4.602
	SRR8316900	Third green stage	14.974
	SRR8316901	Third green stage	12.521
	SRR8316898	Complete white stage	3.992
	SRR8316899	Complete white stage	9.342
	SRR8316903	Complete white stage	6.933
	SRR8316902	Silver flowering stage	5.431
	SRR8316904	Silver flowering stage	8.504
	SRR8316905	Silver flowering stage	2.902
	SRR8316906	Gold flowering stage	6.329
	SRR8316907	Gold flowering stage	7.251
	SRR8316908	Gold flowering stage	8.038
SRP132670	SRR6706286	Control	14.491
	SRR6706287	Light intensity 50%	14.608
	SRR6706288	Light intensity 20%	11.546
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.320
	CNS0095593	Slightly white alabastrum(diploid) 2	8.377
	CNS0095594	Slightly white alabastrum(diploid) 3	11.879
	CNS0095595	Whole white alabastrum(diploid) 2	22.140
	CNS0095596	Whole white alabastrum(diploid) 3	23.089
	CNS0095597	Whole white alabastrum(diploid) 4	32.126
	CNS0095598	Silvery flower (diploied) 1	12.298
	CNS0095599	Silvery flower (diploied) 2	16.183
	CNS0095600	Silvery flower (diploied) 3	13.226
	CNS0095601	Golden flower (diploid) 1	11.933
	CNS0095602	Golden flower (diploid) 2	11.718
	CNS0095603	Golden flower (diploid) 3	11.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.422
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.069
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.225
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.248
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.303
	CNS0095610	Silvery flower (tetraploid) 1	8.724
	CNS0095611	Silvery flower (tetraploid) 2	15.818
	CNS0095612	Silvery flower (tetraploid) 3	36.990
	CNS0095613	Golden flower (tetraploid) 1	7.541
	CNS0095614	Golden flower (tetraploid) 2	5.677
	CNS0095615	Golden flower (tetraploid) 3	14.102
CRA001975	CRR073297	Stem 1	17.985
	CRR073298	Stem 2	15.355
	CRR073299	Stem 3	12.909
	CRR073300	Leaf 1	26.228
	CRR073301	Leaf 2	22.803
	CRR073302	Leaf 3	12.973
	CRR073303	Juvenile bud 1	23.975
	CRR073304	Juvenile bud 2	19.678
	CRR073305	Juvenile bud 3	21.008
	CRR073306	Third green 1	24.752
	CRR073307	Third green 2	19.983
	CRR073308	Third green 3	22.327
	CRR073309	Second white 1	8.283
	CRR073310	Second white 2	14.365
	CRR073311	Second white 3	12.909
	CRR073312	Silver flowering 1	20.805
	CRR073313	Silver flowering 2	19.982
	CRR073314	Silver flowering 3	13.524
	CRR073315	Gold flowering 1	8.208
	CRR073316	Gold flowering 2	4.230
	CRR073317	Gold flowering 3	1.804
	CRR073318	Tawny withering 1	15.934
	CRR073319	Tawny withering 2	18.045
	CRR073320	Tawny withering 3	12.926