Gene detail

Detail information of GWHGAAZE017295

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006350715.1	1.5059E-172	PREDICTED: uncharacterized protein LOC102603859 [Solanum tuberosum]
trEMBL	tr\|M1BCD9\|M1BCD9_SOLTU	6E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042035}
TAIR10	AT3G13940.1	2E-91	DNA binding;DNA-directed RNA polymerases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	4034685	4042646	+
GWHAAZE00000005	mRNA	4034685	4042646	+
GWHAAZE00000005	exon	4034685	4034788	+
GWHAAZE00000005	exon	4039020	4039356	+
GWHAAZE00000005	exon	4040656	4040805	+
GWHAAZE00000005	exon	4041236	4041553	+
GWHAAZE00000005	exon	4042236	4042646	+
GWHAAZE00000005	CDS	4034685	4034788	+
GWHAAZE00000005	CDS	4039020	4039356	+
GWHAAZE00000005	CDS	4040656	4040805	+
GWHAAZE00000005	CDS	4041236	4041553	+
GWHAAZE00000005	CDS	4042236	4042646	+

Transcript Sequence
>GWHTAAZE017315 CACCATTCTCAGAAGCCCTTAAATGCCTCATCCAATGCAAACAATGGTTGTGGAGCCTGGGCGGTTGAACCTTATCTAGATGTGCCGGAGAAGTTGGGAATTAGTCATTTGAATACGCATTCGGATGAAATTGAGTTTAAGATAGAAACTATTAGCGAAAACCCTGACAAAATCTCCCCTTTCATTGGTTATTTCCCTTCTGGATTCAATCCTTGCCCTAATTCACCCCAATCGCAGCCAAGGGTTGGGGTTTTTAGGCATGTAAAACGAAGCAACCGATTGCAGCTCGTTGTGAGCCCTAATAATAGTAGTAGTCAAGTGGATTTTGTTGGTACCAATTACGCAGGCGAGGCAACCGCAGCTCAGGTCTGTTCTTATGCTCTTGGTGTTGTAGATAAAGCTACGAGGACGCTTAAGATGGTTCCAATTTCCGCCAATAAGATTTTTAGGTTAGAACCAAGAGTTGCGGAAGCAGGGTTGACTGGCAATGAAGTTTCGGAGATCTCAAAGGGAGAACTGACTCAGCAAGAGAAGGCTGAGAAAATAAAAGATCTGACATTGATGTATTCAACAAAAAAGACTATAAGAAAGGTTAAAAAAATGGACTCTCTACATCAAAAACAAGATCCAAAATCTCAGGAGTATCTAGACAAAAAATTAGAGGACCAAAAAATAAACAAGGAGGCTGTTGAAGTTGCTGATACTACTAGCGATGCTCGTAATATCCCACCTTATGATATGTCTGCTACTACACCTCAAATGGCTTACCCACTGGACAAGATTATTTTGAAAGGAGAGTGGGATTACCTCTTAGATATTTATGAGCTTTCTCAAGCAGGAGGAGAAGTGAAACCCAATGTTTACCCAAGCTTTGTCTGTAACAGAGTTCATAAGTTGGAGCATATCAAGGATGAGGGGTGGAAGCAGACACTAGCCTGTATATTTTCATACATTACTCATCTTATCAAGTTCAAGGATAAACACTCAATGGATGGTTTCTCCTCTGCAAAGCACCATAAGATCCCGAGCATCTTATCCTTGAAATTTTCTGATATGTTTGTGGATTCAGATTCAAAAAGGCTTTCGGACGAGAAGAGGGATCTTGTTATCAGCTACATTTTGGTGCTTACCCTCTTTGCTGATGATTTCAAGACTGACCCAGCAGATATTGCCAGGGATTTAAGAATGTCTTCAATCAAATTGCGCCCCCACTTTGAACACTTGGGTTGTAAGCTTGTTCGCGAGGGAACTTTGTCTATGGTTAAACTTGCTTTACCATTGAAATTCCCAATGCTGAGGCGGCGCCGGCGAAGGGGCTGA

Network for GWHGAAZE017295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06870.13	RNA_pol_I_A49	89	437	1.70E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03005	RPA49, POLR1E	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.045
	SRR3591706	second leaf	12.235
	SRR3591707	mature leaf	12.086
	SRR3591708	Shoot apex	27.552
	SRR3591709	Stem	18.763
	SRR3591710	White floral bud	18.749
	SRR3591711	White flower	25.432
	SRR3591712	Green floral bud	22.102
	SRR3591713	Yellow flower	19.681
SRP173429	SRR8316895	Juvenile bud stage	12.605
	SRR8316896	Juvenile bud stage	15.500
	SRR8316897	Juvenile bud stage	10.132
	SRR8316894	Third green stage	7.358
	SRR8316900	Third green stage	23.339
	SRR8316901	Third green stage	18.832
	SRR8316898	Complete white stage	7.316
	SRR8316899	Complete white stage	27.552
	SRR8316903	Complete white stage	13.322
	SRR8316902	Silver flowering stage	6.889
	SRR8316904	Silver flowering stage	13.156
	SRR8316905	Silver flowering stage	4.691
	SRR8316906	Gold flowering stage	16.367
	SRR8316907	Gold flowering stage	15.301
	SRR8316908	Gold flowering stage	21.993
SRP132670	SRR6706286	Control	12.655
	SRR6706287	Light intensity 50%	11.582
	SRR6706288	Light intensity 20%	11.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.598
	CNS0095593	Slightly white alabastrum(diploid) 2	17.420
	CNS0095594	Slightly white alabastrum(diploid) 3	12.887
	CNS0095595	Whole white alabastrum(diploid) 2	11.919
	CNS0095596	Whole white alabastrum(diploid) 3	11.576
	CNS0095597	Whole white alabastrum(diploid) 4	10.331
	CNS0095598	Silvery flower (diploied) 1	12.206
	CNS0095599	Silvery flower (diploied) 2	12.895
	CNS0095600	Silvery flower (diploied) 3	20.923
	CNS0095601	Golden flower (diploid) 1	11.760
	CNS0095602	Golden flower (diploid) 2	17.146
	CNS0095603	Golden flower (diploid) 3	16.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.638
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.645
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.797
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.457
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.518
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.868
	CNS0095610	Silvery flower (tetraploid) 1	20.027
	CNS0095611	Silvery flower (tetraploid) 2	22.749
	CNS0095612	Silvery flower (tetraploid) 3	17.595
	CNS0095613	Golden flower (tetraploid) 1	12.583
	CNS0095614	Golden flower (tetraploid) 2	15.600
	CNS0095615	Golden flower (tetraploid) 3	12.681
CRA001975	CRR073297	Stem 1	11.051
	CRR073298	Stem 2	10.647
	CRR073299	Stem 3	13.196
	CRR073300	Leaf 1	10.787
	CRR073301	Leaf 2	10.785
	CRR073302	Leaf 3	10.399
	CRR073303	Juvenile bud 1	13.577
	CRR073304	Juvenile bud 2	9.819
	CRR073305	Juvenile bud 3	8.234
	CRR073306	Third green 1	3.241
	CRR073307	Third green 2	3.122
	CRR073308	Third green 3	3.786
	CRR073309	Second white 1	3.355
	CRR073310	Second white 2	6.426
	CRR073311	Second white 3	6.234
	CRR073312	Silver flowering 1	3.266
	CRR073313	Silver flowering 2	3.637
	CRR073314	Silver flowering 3	4.212
	CRR073315	Gold flowering 1	6.657
	CRR073316	Gold flowering 2	8.857
	CRR073317	Gold flowering 3	3.812
	CRR073318	Tawny withering 1	16.358
	CRR073319	Tawny withering 2	11.567
	CRR073320	Tawny withering 3	11.864