Gene detail

Detail information of GWHGAAZE017284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654465.1	0	PREDICTED: uncharacterized protein LOC100263481 isoform X6 [Vitis vinifera]
Swissprot	tr\|Q9M347\|TRP6_ARATH	3E-11	Telomere repeat-binding protein 6
trEMBL	tr\|F6HXY2\|F6HXY2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59305.1}
TAIR10	AT1G72650.1	3E-93	TRF-like 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3807619	3815860	-
GWHAAZE00000005	mRNA	3807619	3815860	-
GWHAAZE00000005	exon	3807619	3807789	-
GWHAAZE00000005	exon	3808905	3808961	-
GWHAAZE00000005	exon	3809309	3809599	-
GWHAAZE00000005	exon	3810355	3810492	-
GWHAAZE00000005	exon	3812441	3813256	-
GWHAAZE00000005	exon	3813391	3813497	-
GWHAAZE00000005	exon	3814388	3814562	-
GWHAAZE00000005	exon	3815732	3815860	-
GWHAAZE00000005	CDS	3815732	3815860	-
GWHAAZE00000005	CDS	3814388	3814562	-
GWHAAZE00000005	CDS	3813391	3813497	-
GWHAAZE00000005	CDS	3812441	3813256	-
GWHAAZE00000005	CDS	3810355	3810492	-
GWHAAZE00000005	CDS	3809309	3809599	-
GWHAAZE00000005	CDS	3808905	3808961	-
GWHAAZE00000005	CDS	3807619	3807789	-

Transcript Sequence
>GWHTAAZE017304 ATGGAAACAGTGGTTGGAGTCGAGGAAGGCAACAAAGTCAAAATTGAGGATACTGCTGTCACAAAAATTATCTCTGTTACGTCCTTACCAACAGTTATTGCCGATCCTGTTGTGTACAAGCTTGTTCGGGTTGGAGGTGATGGGAGATTAGTGCCTGCAACAGATGAAGAAGTTATGGAGGTTGAGGATTTGATTGAAGATGACAAGTGTGAAATACAATTTATTGCAGATGCCAAGCAACAAGCAGAATGCGTTTCTGACAATGTTTTTTCTTCTGGGAAGTCTCAGTCAAATGGCCCAGAAGATGATCTCTGGCTTGAATGTGAGAACCTTGAAGAAGTTAATGCGGAAGAGTCAAATCCCTTACATGACACAACCGCCGTTTTGGGGAAATTAGATGCTCAATCCGAGGAAGTTGTTCCCTCAACAGTACCGAGTTTGAATGTTAGCCATATTGACCATTTTGAGGATGTGGAATGCTCAAATATTCCTGGTGGATTGGTTGGAAGCATATCGACAACTTCTACAGTCAGTACTAGTTGGAAGCCTGATTTTTCTAAGCTGAAGGGGGAAATATGCTTGGACAACCTATCTGTTAAAGAACTTCATGAAACTTTTAAAGCAACATTTGGGCGGGAAACTTCTGTTAAGGACAAACAGTGGCTTAAGAGGAGGATTTCCATGGGATTGACCAACTCTTGTGATGTTTCAACTACTACTTTTATTATTGAAGATTATAAAGTGGTGAAGAAAGGTAAAGAAGAAAGCTGTAAGAGCATGGATGGTTCTCATGCAGAAGATCCATTAGTTGACGCCATAAATGAGAATGGTGGTGGTTCAGCTGATCAAGATAATCAAATAGAAGAATGTTCGAATGTTTTTGTGAAGAGATTGCAAAATCCCAACTTGGATTGTAGTTCTGTTAATGAAGATCTTTGTGTGGAACAGAGAACAGCCAAAAGAGTTCGGAAACCCACAAGGCGATATATTGAAGAAGTTTCAGAGGTAGAATCCCGAGAATATATGGGGAAGCCAATGTCTTCTGTAAAAAGTTCTGGACATGGCCAGTCATCTCCACAAGCTCGTGTCAGGCCTGTTCAACATGTCCGATCAGATGGGAGACTGGTTGTCACCAGGCAGGATTCCCTTGGAGGTTCTGGAGTTCAGGTACCATATGTATCTCGAGTTCGAAGAGGCCGTCCAAGGGAAAACTATATGGCTCTTATGAAACTCCAACCCAGTGGCATGGGCACAGCTGCAAGACTTGTCAAGAAGGCCTTTGGCGTACGTGGTCCTCGATCCAATAAGGAAAGAGGGAACAAAGTTTTCAAAGCCAGACTGGCCCCGTTATGGGTTCAACAGCCTCTTATTAGTGAACCAGAGAAAGAAGAGCAGTACTTGGAACGAGAAAAAGTGGAGTTAGAGAAAGATGTGGAGCTGAAAGACACAGATTCATCCGGGAATAATTCAGACGACAATGTGGTAACTGTGCCTACAGCTAAAGGTGGAATGAGAAGGAAACATCATCGACCTTGGACTCTCAGTGAGGTTTTAAAGCTAGTCGAAGGTGTAGGTAGGTATGGTGCTGGTCGGTGGTCAGAGATTAAACGGATTGCCTTTGCATCATATTCATACCGAACTTCAGTTGACCTCAAGGACAAGTGGAGGAATCTGCTGAGAGCTAGTTTTGCACAACTGCCAGAGGAGAAAGGGATGCAGAATTCCCGGAAACATGCATCAATTCCGATACCTGCTTCAATTTTGGTAAGAGTGAGGGAGCTAGCTGAAATGCAGTCACAGGTTCCGCCAGAGTTCAGCTTAAGCAGCAGGTTTGCCGGACATGGTGGTAGAAGTGTACAGGAAACGAGACCCGGGTACTTGTAG

Network for GWHGAAZE017284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	510	559	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.352
	SRR3591706	second leaf	23.701
	SRR3591707	mature leaf	33.693
	SRR3591708	Shoot apex	30.342
	SRR3591709	Stem	41.935
	SRR3591710	White floral bud	34.199
	SRR3591711	White flower	34.492
	SRR3591712	Green floral bud	24.718
	SRR3591713	Yellow flower	33.427
SRP173429	SRR8316895	Juvenile bud stage	18.760
	SRR8316896	Juvenile bud stage	24.151
	SRR8316897	Juvenile bud stage	11.522
	SRR8316894	Third green stage	8.212
	SRR8316900	Third green stage	19.186
	SRR8316901	Third green stage	19.563
	SRR8316898	Complete white stage	11.136
	SRR8316899	Complete white stage	30.239
	SRR8316903	Complete white stage	17.068
	SRR8316902	Silver flowering stage	10.776
	SRR8316904	Silver flowering stage	15.761
	SRR8316905	Silver flowering stage	6.549
	SRR8316906	Gold flowering stage	28.089
	SRR8316907	Gold flowering stage	24.302
	SRR8316908	Gold flowering stage	28.070
SRP132670	SRR6706286	Control	12.865
	SRR6706287	Light intensity 50%	13.564
	SRR6706288	Light intensity 20%	12.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.055
	CNS0095593	Slightly white alabastrum(diploid) 2	14.964
	CNS0095594	Slightly white alabastrum(diploid) 3	12.749
	CNS0095595	Whole white alabastrum(diploid) 2	13.065
	CNS0095596	Whole white alabastrum(diploid) 3	9.410
	CNS0095597	Whole white alabastrum(diploid) 4	11.714
	CNS0095598	Silvery flower (diploied) 1	26.083
	CNS0095599	Silvery flower (diploied) 2	20.016
	CNS0095600	Silvery flower (diploied) 3	24.463
	CNS0095601	Golden flower (diploid) 1	26.292
	CNS0095602	Golden flower (diploid) 2	28.928
	CNS0095603	Golden flower (diploid) 3	28.754
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.859
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.599
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.574
	CNS0095610	Silvery flower (tetraploid) 1	25.371
	CNS0095611	Silvery flower (tetraploid) 2	26.753
	CNS0095612	Silvery flower (tetraploid) 3	19.546
	CNS0095613	Golden flower (tetraploid) 1	21.584
	CNS0095614	Golden flower (tetraploid) 2	25.878
	CNS0095615	Golden flower (tetraploid) 3	24.942
CRA001975	CRR073297	Stem 1	26.810
	CRR073298	Stem 2	21.948
	CRR073299	Stem 3	22.436
	CRR073300	Leaf 1	23.542
	CRR073301	Leaf 2	20.276
	CRR073302	Leaf 3	14.491
	CRR073303	Juvenile bud 1	14.552
	CRR073304	Juvenile bud 2	10.920
	CRR073305	Juvenile bud 3	16.191
	CRR073306	Third green 1	9.774
	CRR073307	Third green 2	6.644
	CRR073308	Third green 3	10.042
	CRR073309	Second white 1	7.551
	CRR073310	Second white 2	12.519
	CRR073311	Second white 3	9.410
	CRR073312	Silver flowering 1	9.009
	CRR073313	Silver flowering 2	6.123
	CRR073314	Silver flowering 3	5.523
	CRR073315	Gold flowering 1	23.487
	CRR073316	Gold flowering 2	35.034
	CRR073317	Gold flowering 3	17.973
	CRR073318	Tawny withering 1	21.652
	CRR073319	Tawny withering 2	19.018
	CRR073320	Tawny withering 3	19.739