Gene detail

Detail information of GWHGAAZE017269

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011035732.1	PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic-like [Populus euphratica]
Swissprot	tr\|O24371\|LOX31_SOLTU	Linoleate 13S-lipoxygenase 3-1, chloroplastic (Precursor)
trEMBL	tr\|U5GTE9\|U5GTE9_POPTR	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G17420.1	lipoxygenase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3591214	3596931	+
GWHAAZE00000005	mRNA	3591214	3596931	+
GWHAAZE00000005	exon	3591214	3591232	+
GWHAAZE00000005	exon	3592383	3592462	+
GWHAAZE00000005	exon	3593839	3594346	+
GWHAAZE00000005	exon	3594777	3594868	+
GWHAAZE00000005	exon	3594977	3595234	+
GWHAAZE00000005	exon	3595495	3595766	+
GWHAAZE00000005	exon	3596345	3596525	+
GWHAAZE00000005	exon	3596674	3596931	+
GWHAAZE00000005	CDS	3591214	3591232	+
GWHAAZE00000005	CDS	3592383	3592462	+
GWHAAZE00000005	CDS	3593839	3594346	+
GWHAAZE00000005	CDS	3594777	3594868	+
GWHAAZE00000005	CDS	3594977	3595234	+
GWHAAZE00000005	CDS	3595495	3595766	+
GWHAAZE00000005	CDS	3596345	3596525	+
GWHAAZE00000005	CDS	3596674	3596931	+

Transcript Sequence
>GWHTAAZE017289 ATGGGAACTTCAAGTTTAGAAACAAAGGTTCCAAAGAGAAGCAAGGAGGCGGTGTTGAAGGACTGGGGGAAGAAATCAAGTGTTAGAGGGGAGAGGCGGCCATATCTGCCCAACGAGACACCGGCAGGTCTAAAAGCATTAAGAGAGGAAGAGCTCAAGAATTTAAGGGGTAACGGAAACGGCGTTAGAAAATTATCGGACATGATTTACGATTTTGACGAGTACAATGATTTGGGCAACCCCGACAGGGGGTTCGAACTCGTTAGGCCAACTTTGGGTGGTAACAAAATGCCATATCCAAGAAGATGTCGTACCGGCCGTCTCCCAACATACATGGATTCACATGCAGAGAGCAGAATCGAGAAGTCGTTGCCAATGTATGTGCCTAGAGACGAACAATTTGAGGAATCTAAACAAAATACATTTTCTGCAGGGAGGTTAAAAGCGGTGCTACATAACATATTACCGTCTTTAATAGCTAATATGTCATCTAATAACCATGATTTTAAGGACTTCTCTCACATTGATAGCCTCTACAAGGAGGATCTCCTCTTTAAACTAGGCCAGGGCGGTCTTCTCAAATATAACACTCCTAAGATTGCCTCTACGAGCATACTTGAACCAGAAATCTATGGTCCACAAGAATCAGCCCTCAAAGAAGAACACATTATTGGACAGATCAATGGCATGACCATACAAGCTATGGAGGGGAATAAGCTATTTATAGTGGACTACCATGATATTTACCTGCCATTTCTTGATCGCATAAACGCTCTTGATGGCCATAAATCATATGCCACTCGTACAATCTTCTTCTTGACTCCATTAGGCACTCTCAAACCAATTGCAATCGAACTTAGCCTCCCTCCACATGGTCCCAATTCCCGGTCCAAGCATGTGGTCACACCAGCGGTCAACGCAACCTCTAATTGGACATGGCAGCTAGCCAAAGCCCACGTTAAGGACACATGCGTGCGTGGAACCATTCATATTGGCGGCCCACAGACAATTGAGTGTGATATGATGCACCCTATATTTAAGCTTCTGGACCCGCACATGAGATACACACTGGAGATAAATGCGCTGGCCCGACAAAGTTTGATTAGCGGCGATGGTGTGATAGAGTCTTGCTTCACTCCGGGTCGGTACTGTATGGAGATCAGTTCTGCTGCCTATAAGAATTTCTGGCGGTTTGATTTAGAGGACCTTCCAGCTGATCTAATCCGAAGAGGTATTGCAGTACCTGACCCAACACAGGCCAATGGGTTGAAGCTCCTAATCGAAGACTACCCATACGCCTCCGATGGGCTCCTTAACTGGAACGCCATAGAAAACTGGGTCCGAACGTACGTTAGCCGCTACCACCCAGACCCAACCTTAATCTCTACCGACACTGAAACTGCAAGCCTGTACCCTTACGGCGGCCATGTACCAAATCGTCCACCTCTAATGCGCCGATTAATTCCCGAGGAGAATAATCCTGAGTACGCCAATTTTCGCGCCGATCCGCAGAAGTATTTTCTAACGGCGATACCGGGTTTGTTACAGGCATCCAAGTATATGGCCGTGGTGGACACGTTATCGACGCACTCACCTGATGAGAAGTATATTGGGGAGAGATGTCAGCCGTCGATTTGGAGTGGGGACTGGGGACGGAGAGATGGTTGA

Network for GWHGAAZE017269

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00305.20	Lipoxygenase	43	184	1.70E-49
PF00305.20	Lipoxygenase	202	471	4.40E-107
PF00305.20	Lipoxygenase	471	549	1.60E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.074
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.034
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.197
	SRR8316896	Juvenile bud stage	0.650
	SRR8316897	Juvenile bud stage	0.184
	SRR8316894	Third green stage	0.105
	SRR8316900	Third green stage	0.307
	SRR8316901	Third green stage	0.330
	SRR8316898	Complete white stage	0.076
	SRR8316899	Complete white stage	0.160
	SRR8316903	Complete white stage	0.080
	SRR8316902	Silver flowering stage	0.067
	SRR8316904	Silver flowering stage	0.100
	SRR8316905	Silver flowering stage	0.072
	SRR8316906	Gold flowering stage	0.219
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.021
SRP132670	SRR6706286	Control	0.233
	SRR6706287	Light intensity 50%	0.193
	SRR6706288	Light intensity 20%	0.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.393
	CNS0095593	Slightly white alabastrum(diploid) 2	0.186
	CNS0095594	Slightly white alabastrum(diploid) 3	0.292
	CNS0095595	Whole white alabastrum(diploid) 2	0.297
	CNS0095596	Whole white alabastrum(diploid) 3	0.333
	CNS0095597	Whole white alabastrum(diploid) 4	0.297
	CNS0095598	Silvery flower (diploied) 1	0.266
	CNS0095599	Silvery flower (diploied) 2	0.058
	CNS0095600	Silvery flower (diploied) 3	0.046
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.127
	CNS0095603	Golden flower (diploid) 3	0.133
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.201
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.218
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.151
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.282
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.243
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.013
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.416
	CRR073298	Stem 2	0.479
	CRR073299	Stem 3	0.212
	CRR073300	Leaf 1	0.806
	CRR073301	Leaf 2	0.325
	CRR073302	Leaf 3	0.223
	CRR073303	Juvenile bud 1	0.167
	CRR073304	Juvenile bud 2	0.269
	CRR073305	Juvenile bud 3	0.281
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.045
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.040
	CRR073314	Silver flowering 3	0.207
	CRR073315	Gold flowering 1	0.032
	CRR073316	Gold flowering 2	0.107
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.578
	CRR073319	Tawny withering 2	0.031
	CRR073320	Tawny withering 3	0.239