Gene detail

Detail information of GWHGAAZE017261

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002532723.1	8.8194E-172	proteasome subunit alpha type, putative [Ricinus communis]
Swissprot	tr\|Q9XG77\|PSA6_TOBAC	4E-173	Proteasome subunit alpha type-6
trEMBL	tr\|B9T3A4\|B9T3A4_RICCO	3E-172	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT2G05840.1	3E-130	20S proteasome subunit PAA2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3402049	3406213	+
GWHAAZE00000005	mRNA	3402049	3406213	+
GWHAAZE00000005	exon	3402049	3402124	+
GWHAAZE00000005	exon	3402354	3402448	+
GWHAAZE00000005	exon	3402547	3402628	+
GWHAAZE00000005	exon	3402867	3402963	+
GWHAAZE00000005	exon	3403478	3403536	+
GWHAAZE00000005	exon	3403934	3404016	+
GWHAAZE00000005	exon	3404473	3404568	+
GWHAAZE00000005	exon	3405189	3405248	+
GWHAAZE00000005	exon	3406121	3406213	+
GWHAAZE00000005	CDS	3402049	3402124	+
GWHAAZE00000005	CDS	3402354	3402448	+
GWHAAZE00000005	CDS	3402547	3402628	+
GWHAAZE00000005	CDS	3402867	3402963	+
GWHAAZE00000005	CDS	3403478	3403536	+
GWHAAZE00000005	CDS	3403934	3404016	+
GWHAAZE00000005	CDS	3404473	3404568	+
GWHAAZE00000005	CDS	3405189	3405248	+
GWHAAZE00000005	CDS	3406121	3406213	+

Transcript Sequence
>GWHTAAZE017281 ATGAGTCGAGGAAGCGGAGGTGGATATGATCGTCATATTACCATATTTTCCCCCGAAGGCCGTCTCTACCAAGTAGAGTATGCTTTCAAAGCTGTTAAAGCAGCTGGGGTTACCTCGATCGGTGTGCGAGGCAAAGACTCGGTCTGTGTTGTAACCCAGAAGAAGGTTCCGGACAAACTTTTGGATCCAACCAGTGTCACGCATCTTTTTCCCATCACAAAGTACCTCGGGTTGTTAGCTACCGGCACCACAGCTGATGCAAGGACCTTGGTTCAACAGGCAAGGAATGAAGCAGCTGAGTTTCGCTTCAAATACGGATATGAGATGCCTGTTGATGTATTAGCTAGATGGATTGCAGACAAATCTCAAGTCTATACTCAACATGCTTATATGAGGCCTCTTGGAGTAGTTGCTATGGTTTTGGGTATCGATGATGAGTTTGGGCCTCGACTATTTAAATGTGATCCTGCTGGCCACTTCTACGGGCACAAGGCAACAAGTGCTGGATCGAAAGAGCAAGAGGCAATAAATTTTCTGGAGAAGAAAATGAAAAATGATCCCGCATTTTCCTATGAGGAGACAGTACAGACTGCAATTTCTGCCCTACAATCTGTTCTACAAGAGGATTTCAAGGCAACCGAGATTGAGGTTGGAGTTGTTAGAAAGGATAATCCAGTCTTCCAAGTGTTGTCGACTGAGGAGATTGATGAGCACTTGACTGCTATCAGTGAGCGGGATTAA

Network for GWHGAAZE017261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0223	GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component GO:0005839 proteasome core complex GOslim:cellular_component GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GOslim:molecular_function Ubiquitin_UBC family Ubiquitin_UBC family GO:0004175 endopeptidase activity GOslim:molecular_function GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process GO:0015031 protein transport GOslim:biological_process GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process

Module ID

Function Annotation

CFinderModule0223

GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component
GO:0005839 proteasome core complex GOslim:cellular_component
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GOslim:molecular_function
Ubiquitin_UBC family Ubiquitin_UBC family
GO:0004175 endopeptidase activity GOslim:molecular_function
GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function
GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process
GO:0015031 protein transport GOslim:biological_process
GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	9	31	4.30E-15
PF00227.27	Proteasome	35	220	4.20E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02730	PSMA6	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	179.382
	SRR3591706	second leaf	93.215
	SRR3591707	mature leaf	89.512
	SRR3591708	Shoot apex	147.690
	SRR3591709	Stem	188.334
	SRR3591710	White floral bud	188.323
	SRR3591711	White flower	332.885
	SRR3591712	Green floral bud	204.158
	SRR3591713	Yellow flower	314.597
SRP173429	SRR8316895	Juvenile bud stage	114.354
	SRR8316896	Juvenile bud stage	160.300
	SRR8316897	Juvenile bud stage	77.944
	SRR8316894	Third green stage	71.247
	SRR8316900	Third green stage	250.224
	SRR8316901	Third green stage	228.567
	SRR8316898	Complete white stage	121.049
	SRR8316899	Complete white stage	335.853
	SRR8316903	Complete white stage	156.027
	SRR8316902	Silver flowering stage	134.970
	SRR8316904	Silver flowering stage	142.568
	SRR8316905	Silver flowering stage	80.256
	SRR8316906	Gold flowering stage	390.030
	SRR8316907	Gold flowering stage	345.099
	SRR8316908	Gold flowering stage	369.115
SRP132670	SRR6706286	Control	346.728
	SRR6706287	Light intensity 50%	344.583
	SRR6706288	Light intensity 20%	372.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	119.115
	CNS0095593	Slightly white alabastrum(diploid) 2	158.358
	CNS0095594	Slightly white alabastrum(diploid) 3	124.450
	CNS0095595	Whole white alabastrum(diploid) 2	132.016
	CNS0095596	Whole white alabastrum(diploid) 3	141.585
	CNS0095597	Whole white alabastrum(diploid) 4	127.578
	CNS0095598	Silvery flower (diploied) 1	130.006
	CNS0095599	Silvery flower (diploied) 2	128.110
	CNS0095600	Silvery flower (diploied) 3	178.303
	CNS0095601	Golden flower (diploid) 1	115.862
	CNS0095602	Golden flower (diploid) 2	143.797
	CNS0095603	Golden flower (diploid) 3	151.132
	CNS0095604	Slightly white alabastrum(tetraploid) 1	128.935
	CNS0095605	Slightly white alabastrum(tetraploid) 2	113.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	169.843
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.585
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	154.767
	CNS0095610	Silvery flower (tetraploid) 1	188.211
	CNS0095611	Silvery flower (tetraploid) 2	178.340
	CNS0095612	Silvery flower (tetraploid) 3	164.312
	CNS0095613	Golden flower (tetraploid) 1	158.761
	CNS0095614	Golden flower (tetraploid) 2	180.588
	CNS0095615	Golden flower (tetraploid) 3	239.406
CRA001975	CRR073297	Stem 1	144.433
	CRR073298	Stem 2	158.275
	CRR073299	Stem 3	177.573
	CRR073300	Leaf 1	208.602
	CRR073301	Leaf 2	211.687
	CRR073302	Leaf 3	239.436
	CRR073303	Juvenile bud 1	259.101
	CRR073304	Juvenile bud 2	245.064
	CRR073305	Juvenile bud 3	231.715
	CRR073306	Third green 1	149.699
	CRR073307	Third green 2	127.269
	CRR073308	Third green 3	124.053
	CRR073309	Second white 1	226.514
	CRR073310	Second white 2	209.930
	CRR073311	Second white 3	133.263
	CRR073312	Silver flowering 1	119.927
	CRR073313	Silver flowering 2	141.762
	CRR073314	Silver flowering 3	91.395
	CRR073315	Gold flowering 1	92.767
	CRR073316	Gold flowering 2	97.940
	CRR073317	Gold flowering 3	80.627
	CRR073318	Tawny withering 1	137.861
	CRR073319	Tawny withering 2	140.750
	CRR073320	Tawny withering 3	122.635