Gene detail

Detail information of GWHGAAZE017255

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009788384.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 [Nicotiana sylvestris]
Swissprot	tr\|Q3E991\|Y5269_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 (Precursor)
trEMBL	tr\|A0A059AJE4\|A0A059AJE4_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW53520.1}
TAIR10	AT3G42880.1	5E-147	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3311384	3313446	+
GWHAAZE00000005	mRNA	3311384	3313446	+
GWHAAZE00000005	exon	3311384	3312719	+
GWHAAZE00000005	exon	3312821	3313446	+
GWHAAZE00000005	CDS	3311384	3312719	+
GWHAAZE00000005	CDS	3312821	3313446	+

Transcript Sequence
>GWHTAAZE017275 ATGGCCATTGTTTCTGTTCGTAAAACAGCTTCCCCGATTTTAATATTCTACATAACAATTTTCATCATCATCTTGTCTCCACTTATGGCTGCATCCCCTAATTCCGAAGCCGAGGCTCTCCTTAAACTTAAGAATTCATTCACCAATAAAGATTCTCTTGCTTCTTGGGAACCCAAATCCGAGCCTTGCGCCAAAGCTAAAACATGGGTTGGTTTAGTTTGCCATAAAGGTAAAGTATCTGGCATTCACCTTACCAAAATGGGATTGTCGGGGAAGATAGATGTCGACGCCTTGGATCAGCTCCCGGGCCTAAGAACACTTAGTTTTGAGGACAATTCTTTCACAGGTCCAATGCCTCAACTCAACCGGATCGGTGCTTTGAAGGGCCTTTATATGTCGGGTAATCAGTTTTCGGGTGAAATTCCAAAGGATTTTTTCCAAACTATGCATTCGATCAAGAAAATAAACCTATCCGGCAACAAATTCACGGGTGAAATCCCTTCGTCGCTGTCCCAACTTACCCATTTAATGGATTTGCATCTTGAAAACAATCAGTTCTCGGGTTCAATTCCTCCGTTAGAACAGAAAAGTTTGATCTCACTAGACGTATCCAACAATAAACTAGATGGGGAAATTCCACCGAGTCTATCTAAATTTAACGCGACCTCATTTCAAGGCAATGCAGGTCTTTGTGGAACGAAAATAGGTAAAGAGTGTGACAAAGAAGCGGCTCTGGCCGCACAGGCTCCACCGATCGCACCACCAGCTAGCGATCATGAAGAGGCGCGTTCTTTGGGGATCGCGTACGGGCTAATGAGCGCGTCAGCTATAATTCTCGGCGTAATGATGACCGGAATCTTGATTATGAGGCGTAGGCAAGACAAATTCGACATGCTAGAGAAGGAGTGTCTTGACGACTCAGTTAATGTGCGAATGTCGAAAAGGGGTGGCTCATCGACAAGAGTGGGTAGTGTGGGGGGTAGCCGGAGGGGGTCGAGCCATGGTTCAAGGGGCAGTGGGGACTTAGTAATGGTAACTGATGAAAAGGGATTTTTTTGGATGACCGATTTGATGAAGGCAGCCGCTGAAGTGCTTGGAAACGGCTCGTTGGGTTCGTCATATAAGGCCATGATGCCTAACGGATTTTCAGTTGTGGTGAAGAGAACGCAACAAATGAATAAACTCGGCCGAGACGGGTTCGAAACAGAGATCACAAGATTTGCAAGACTAAAACACCAGAATATATTGACCCCCCTAGCTTACCATTACAGGAAAGAGGAGAAGCTCTTAGTTTTTGAGCACATTTCTAAAGGAAGTTTGCTTTTCCTATTACATGGTGATCGTGGACAGTCGCACGCTGACCTTAATTGGACAGTTCGTCTAAAAATTATTAAAGGGATCGCTCAAGGATTGGGTTATCTTCACACAGAACTATCATCTCTAGATGTACCTCACGGCAATCTGAAGTCGAGCAATGTTCTTCTAACCCCCAACTACGAGCCTCTACTAGCAGATTTTGGGTTCAGCGCTTTACTCAACAACAATAAAGCGGCAAACGTATTATTTGCCTACAAATGTCCCGAGGTTGCACAACAGTGCTACGTGTCACCGAAATCCGATATTTACTGCCTGGGAATCATCATTCTTGAGGTCCTAACGGGGAAGTTTCCATGTCAGTATCTCAGCAACGGTAAGGGTGGGACGGACGTAGTCCAATGGACAAGGTCAGCAATTCGAGAAGGGAGAGAAGTGGAATTGTTGGACCCTGATATTATTGCAAGCTTTACAAAAAGTGGTCACGGTGAGATGAAACGGATGCTCCACATTGGCGCGGCTTGTACTGAAAGTAACCCAGATCAACGGCTAGAAATTAGGGAGGCCATTAGGAGGATAGAAGAAATACAGATTGATGGTTCGGGGAGAGGGAATGATAACGATAGTTATGCATTTGAGATTTCTTAA

Network for GWHGAAZE017255

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	33	74	1.50E-08
PF13855.7	LRR_8	127	186	2.00E-07
PF00560.34	LRR_1	197	219	0.27
PF00069.26	Pkinase	363	628	2.70E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.191
	SRR3591706	second leaf	0.036
	SRR3591707	mature leaf	0.016
	SRR3591708	Shoot apex	0.154
	SRR3591709	Stem	0.067
	SRR3591710	White floral bud	20.317
	SRR3591711	White flower	1.446
	SRR3591712	Green floral bud	4.064
	SRR3591713	Yellow flower	0.868
SRP173429	SRR8316895	Juvenile bud stage	1.080
	SRR8316896	Juvenile bud stage	0.624
	SRR8316897	Juvenile bud stage	1.405
	SRR8316894	Third green stage	0.207
	SRR8316900	Third green stage	1.416
	SRR8316901	Third green stage	1.755
	SRR8316898	Complete white stage	0.090
	SRR8316899	Complete white stage	0.153
	SRR8316903	Complete white stage	0.041
	SRR8316902	Silver flowering stage	0.243
	SRR8316904	Silver flowering stage	0.762
	SRR8316905	Silver flowering stage	0.119
	SRR8316906	Gold flowering stage	0.026
	SRR8316907	Gold flowering stage	0.063
	SRR8316908	Gold flowering stage	0.086
SRP132670	SRR6706286	Control	1.485
	SRR6706287	Light intensity 50%	1.599
	SRR6706288	Light intensity 20%	1.289
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.682
	CNS0095593	Slightly white alabastrum(diploid) 2	0.919
	CNS0095594	Slightly white alabastrum(diploid) 3	0.787
	CNS0095595	Whole white alabastrum(diploid) 2	1.702
	CNS0095596	Whole white alabastrum(diploid) 3	2.530
	CNS0095597	Whole white alabastrum(diploid) 4	3.241
	CNS0095598	Silvery flower (diploied) 1	1.225
	CNS0095599	Silvery flower (diploied) 2	4.569
	CNS0095600	Silvery flower (diploied) 3	1.281
	CNS0095601	Golden flower (diploid) 1	2.058
	CNS0095602	Golden flower (diploid) 2	1.382
	CNS0095603	Golden flower (diploid) 3	1.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.068
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.586
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.924
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.540
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.318
	CNS0095610	Silvery flower (tetraploid) 1	0.817
	CNS0095611	Silvery flower (tetraploid) 2	3.208
	CNS0095612	Silvery flower (tetraploid) 3	8.084
	CNS0095613	Golden flower (tetraploid) 1	1.485
	CNS0095614	Golden flower (tetraploid) 2	0.383
	CNS0095615	Golden flower (tetraploid) 3	3.192
CRA001975	CRR073297	Stem 1	1.109
	CRR073298	Stem 2	0.911
	CRR073299	Stem 3	0.974
	CRR073300	Leaf 1	1.395
	CRR073301	Leaf 2	0.682
	CRR073302	Leaf 3	0.411
	CRR073303	Juvenile bud 1	3.896
	CRR073304	Juvenile bud 2	4.861
	CRR073305	Juvenile bud 3	0.667
	CRR073306	Third green 1	3.942
	CRR073307	Third green 2	4.587
	CRR073308	Third green 3	3.757
	CRR073309	Second white 1	0.202
	CRR073310	Second white 2	0.853
	CRR073311	Second white 3	0.996
	CRR073312	Silver flowering 1	5.052
	CRR073313	Silver flowering 2	6.658
	CRR073314	Silver flowering 3	1.707
	CRR073315	Gold flowering 1	3.860
	CRR073316	Gold flowering 2	1.383
	CRR073317	Gold flowering 3	1.837
	CRR073318	Tawny withering 1	4.897
	CRR073319	Tawny withering 2	4.237
	CRR073320	Tawny withering 3	3.650