Gene detail

Detail information of GWHGAAZE017248

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97813.1	1.2296E-145	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	4E-106	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|A0A068TR21\|A0A068TR21_COFCA	5E-146	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97813.1}
TAIR10	AT3G14180.1	9E-52	sequence-specific DNA binding transcription factors

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3179316	3180421	+
GWHAAZE00000005	mRNA	3179316	3180421	+
GWHAAZE00000005	exon	3179316	3180093	+
GWHAAZE00000005	exon	3180168	3180421	+
GWHAAZE00000005	CDS	3179316	3180093	+
GWHAAZE00000005	CDS	3180168	3180421	+

Transcript Sequence
>GWHTAAZE017268 ATGGAAGACGATGAAGAAATCCAGTCACATCCGTCGCCCGGTAGTGGATCTCCGGAGACTCCACGCCAGAACGGACGGATTACGGTGACGGTGGCCGCCGCCGGCCCCCCTCAGAACACCCTCACCCTGGCCCTCCCCATACAACAACAGCAGCCCCTGCAGACCAGAACAGGAGGCAGCGGCGGAGGAGGCGGTGGGCGTGAAGACTGCTGGAGCGAAGGGGCGACATCGGTGCTAATCGACGCCTGGGGTGAACGTTACCTGGAACTGAGCAGGGGAAATCTGAAGCAGAAGCACTGGAAAGAGGTAGCTGATATAGTCAGTAGCAGAGAAGATTATGCCAAAGCCCCTAAAACTGATATTCAGTGCAAGAATCGCATCGATACTGTCAAGAAGAAGTATAAGCTGGAGAAATCAAAGATGGCCACAGGTAGCGGTCCGAGCAAGTGGCCCTTTTATGATAGACTAGATCAATTGATCGGACCCACAGCCAAGATCACATCCGGCAGCGGTGCAGGCCCATCTTCTGTAACTCCGGCGCTACCTTCAGGGAGCCATAGAGCCGTGCCGTATGGGATTCCGGTGGGAATTAGATCAGCCCAATTTCAGAAACAACAACAGAAGCAAAAGCAACCACAAATTCTTCGAAGGCGACCTCCGGTGGATTCAGATTCATCGCACTCGGAACCGGACCCTTCGCCGGATTCCACGGATAGCTTTCCACCGGAGCCATATGAGCGGAAGAGGCCTAGGGTTCAACCAAGGGAATTCAATGTGGTGAGGGAACTGACTAGGGCTATACTGAAATTTGGGGAGGCTTATGAACAGGCGGAAAGCTCGAAGCTGCAGCAATTAGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCAAAGGAGCTGGAGTTGCAAAGGATGAAGTTCTTCATGAACACACAATTGGAGCTTTCGCAGCTCAAGCATAGGAGGGTTGGTGGTGGTAACAGTAATCATCATATGAATAACAATAACAACAATAACAGTGATAGCAGTAATTAG

Network for GWHGAAZE017248

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	68	159	6.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.510
	SRR3591706	second leaf	11.601
	SRR3591707	mature leaf	20.838
	SRR3591708	Shoot apex	23.917
	SRR3591709	Stem	36.268
	SRR3591710	White floral bud	35.583
	SRR3591711	White flower	31.906
	SRR3591712	Green floral bud	34.200
	SRR3591713	Yellow flower	20.717
SRP173429	SRR8316895	Juvenile bud stage	22.123
	SRR8316896	Juvenile bud stage	29.736
	SRR8316897	Juvenile bud stage	15.072
	SRR8316894	Third green stage	11.101
	SRR8316900	Third green stage	28.056
	SRR8316901	Third green stage	34.654
	SRR8316898	Complete white stage	15.805
	SRR8316899	Complete white stage	48.744
	SRR8316903	Complete white stage	25.517
	SRR8316902	Silver flowering stage	10.136
	SRR8316904	Silver flowering stage	10.827
	SRR8316905	Silver flowering stage	6.966
	SRR8316906	Gold flowering stage	24.416
	SRR8316907	Gold flowering stage	22.653
	SRR8316908	Gold flowering stage	31.476
SRP132670	SRR6706286	Control	54.309
	SRR6706287	Light intensity 50%	52.799
	SRR6706288	Light intensity 20%	52.819
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.800
	CNS0095593	Slightly white alabastrum(diploid) 2	33.515
	CNS0095594	Slightly white alabastrum(diploid) 3	35.236
	CNS0095595	Whole white alabastrum(diploid) 2	29.968
	CNS0095596	Whole white alabastrum(diploid) 3	22.005
	CNS0095597	Whole white alabastrum(diploid) 4	26.787
	CNS0095598	Silvery flower (diploied) 1	31.713
	CNS0095599	Silvery flower (diploied) 2	30.318
	CNS0095600	Silvery flower (diploied) 3	31.184
	CNS0095601	Golden flower (diploid) 1	38.127
	CNS0095602	Golden flower (diploid) 2	34.066
	CNS0095603	Golden flower (diploid) 3	35.233
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.192
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.597
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.391
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.325
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.329
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.622
	CNS0095610	Silvery flower (tetraploid) 1	30.276
	CNS0095611	Silvery flower (tetraploid) 2	32.494
	CNS0095612	Silvery flower (tetraploid) 3	25.066
	CNS0095613	Golden flower (tetraploid) 1	27.752
	CNS0095614	Golden flower (tetraploid) 2	28.428
	CNS0095615	Golden flower (tetraploid) 3	23.694
CRA001975	CRR073297	Stem 1	37.335
	CRR073298	Stem 2	41.959
	CRR073299	Stem 3	46.096
	CRR073300	Leaf 1	39.416
	CRR073301	Leaf 2	41.205
	CRR073302	Leaf 3	38.595
	CRR073303	Juvenile bud 1	33.880
	CRR073304	Juvenile bud 2	30.453
	CRR073305	Juvenile bud 3	37.669
	CRR073306	Third green 1	27.224
	CRR073307	Third green 2	23.801
	CRR073308	Third green 3	21.075
	CRR073309	Second white 1	17.436
	CRR073310	Second white 2	16.369
	CRR073311	Second white 3	15.759
	CRR073312	Silver flowering 1	16.566
	CRR073313	Silver flowering 2	17.251
	CRR073314	Silver flowering 3	15.834
	CRR073315	Gold flowering 1	18.627
	CRR073316	Gold flowering 2	28.992
	CRR073317	Gold flowering 3	21.809
	CRR073318	Tawny withering 1	25.633
	CRR073319	Tawny withering 2	28.220
	CRR073320	Tawny withering 3	27.667