Detail information of GWHGAAZE017240


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrO80377.1RSSA_DAUCA4.5305E-163RecName: Full=40S ribosomal protein SA; AltName: Full=p40 [Daucus carota]
Swissprottr|O80377|RSSA_DAUCA2E-16540S ribosomal protein SA {ECO:0000255|HAMAP-Rule:MF_03015}
trEMBLtr|K4BEV0|K4BEV0_SOLLC5E-16240S ribosomal protein SA {ECO:0000256|HAMAP-Rule:MF_03015}
TAIR10AT1G72370.24E-10840s ribosomal protein SA

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene31005523103582-
GWHAAZE00000005mRNA31005523103582-
GWHAAZE00000005exon31034593103582-
GWHAAZE00000005exon31021083102370-
GWHAAZE00000005exon31016933101890-
GWHAAZE00000005exon31012533101460-
GWHAAZE00000005exon31005523100967-
GWHAAZE00000005CDS31034593103582-
GWHAAZE00000005CDS31021083102370-
GWHAAZE00000005CDS31016933101890-
GWHAAZE00000005CDS31012533101460-
GWHAAZE00000005CDS31008673100967-
GWHAAZE00000005three_prime_UTR31005523100866-
Transcript Sequence

Network for GWHGAAZE017240

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00318.21Ribosomal_S2151101.70E-13
PF00318.21Ribosomal_S21131791.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02998RP-SAe, RPSA Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf219.270
SRR3591706second leaf107.232
SRR3591707mature leaf39.455
SRR3591708Shoot apex277.889
SRR3591709Stem91.462
SRR3591710White floral bud87.015
SRR3591711White flower120.229
SRR3591712Green floral bud203.546
SRR3591713Yellow flower80.187
SRP173429 SRR8316895Juvenile bud stage 136.357
SRR8316896Juvenile bud stage 200.860
SRR8316897Juvenile bud stage 97.440
SRR8316894Third green stage 77.048
SRR8316900Third green stage 251.735
SRR8316901Third green stage 227.999
SRR8316898Complete white stage 46.259
SRR8316899Complete white stage 188.151
SRR8316903Complete white stage 63.675
SRR8316902Silver flowering stage50.314
SRR8316904Silver flowering stage46.382
SRR8316905Silver flowering stage20.279
SRR8316906Gold flowering stage 83.651
SRR8316907Gold flowering stage 87.601
SRR8316908Gold flowering stage 107.188
SRP132670SRR6706286Control207.457
SRR6706287Light intensity 50%207.655
SRR6706288Light intensity 20%229.778
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1222.010
CNS0095593Slightly white alabastrum(diploid) 2255.225
CNS0095594Slightly white alabastrum(diploid) 3232.194
CNS0095595Whole white alabastrum(diploid) 2191.341
CNS0095596Whole white alabastrum(diploid) 3236.409
CNS0095597Whole white alabastrum(diploid) 4133.625
CNS0095598Silvery flower (diploied) 1103.094
CNS0095599Silvery flower (diploied) 284.045
CNS0095600Silvery flower (diploied) 393.861
CNS0095601Golden flower (diploid) 173.664
CNS0095602Golden flower (diploid) 286.745
CNS0095603Golden flower (diploid) 381.903
CNS0095604Slightly white alabastrum(tetraploid) 1195.461
CNS0095605Slightly white alabastrum(tetraploid) 2197.733
CNS0095606Slightly white alabastrum(tetraploid) 3236.583
CNS0095607Whole white alabastrum(tetraploid) 1104.298
CNS0095608Whole white alabastrum(tetraploid) 290.733
CNS0095609Whole white alabastrum(tetraploid) 3195.831
CNS0095610Silvery flower (tetraploid) 184.160
CNS0095611Silvery flower (tetraploid) 273.128
CNS0095612Silvery flower (tetraploid) 358.658
CNS0095613Golden flower (tetraploid) 149.148
CNS0095614Golden flower (tetraploid) 273.973
CNS0095615Golden flower (tetraploid) 347.638
CRA001975CRR073297Stem 1167.015
CRR073298Stem 2160.425
CRR073299Stem 3181.725
CRR073300Leaf 1167.718
CRR073301Leaf 2189.507
CRR073302Leaf 3204.512
CRR073303Juvenile bud 1173.898
CRR073304Juvenile bud 2147.748
CRR073305Juvenile bud 3162.817
CRR073306Third green 135.841
CRR073307Third green 237.343
CRR073308Third green 337.169
CRR073309Second white 140.599
CRR073310Second white 230.703
CRR073311Second white 325.759
CRR073312Silver flowering 135.077
CRR073313Silver flowering 246.844
CRR073314Silver flowering 336.124
CRR073315Gold flowering 161.984
CRR073316Gold flowering 268.680
CRR073317Gold flowering 352.830
CRR073318Tawny withering 1155.834
CRR073319Tawny withering 2127.116
CRR073320Tawny withering 3152.091