Gene detail

Detail information of GWHGAAZE017235

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO97800.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6NQ79\|ARID4_ARATH	AT-rich interactive domain-containing protein 4
trEMBL	tr\|A0A068TN95\|A0A068TN95_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97800.1}
TAIR10	AT3G43240.1	ARID/BRIGHT DNA-binding domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	3040985	3046674	+
GWHAAZE00000005	mRNA	3040985	3046674	+
GWHAAZE00000005	exon	3040985	3041098	+
GWHAAZE00000005	exon	3041204	3041392	+
GWHAAZE00000005	exon	3041500	3041553	+
GWHAAZE00000005	exon	3041716	3041804	+
GWHAAZE00000005	exon	3042543	3042822	+
GWHAAZE00000005	exon	3042931	3042987	+
GWHAAZE00000005	exon	3043288	3043319	+
GWHAAZE00000005	exon	3043689	3043824	+
GWHAAZE00000005	exon	3043937	3044110	+
GWHAAZE00000005	exon	3044224	3044826	+
GWHAAZE00000005	exon	3045570	3045707	+
GWHAAZE00000005	exon	3045846	3045944	+
GWHAAZE00000005	exon	3046152	3046252	+
GWHAAZE00000005	exon	3046352	3046442	+
GWHAAZE00000005	exon	3046576	3046674	+
GWHAAZE00000005	CDS	3040985	3041098	+
GWHAAZE00000005	CDS	3041204	3041392	+
GWHAAZE00000005	CDS	3041500	3041553	+
GWHAAZE00000005	CDS	3041716	3041804	+
GWHAAZE00000005	CDS	3042543	3042822	+
GWHAAZE00000005	CDS	3042931	3042987	+
GWHAAZE00000005	CDS	3043288	3043319	+
GWHAAZE00000005	CDS	3043689	3043824	+
GWHAAZE00000005	CDS	3043937	3044110	+
GWHAAZE00000005	CDS	3044224	3044826	+
GWHAAZE00000005	CDS	3045570	3045707	+
GWHAAZE00000005	CDS	3045846	3045944	+
GWHAAZE00000005	CDS	3046152	3046252	+
GWHAAZE00000005	CDS	3046352	3046442	+
GWHAAZE00000005	CDS	3046576	3046674	+

Transcript Sequence
>GWHTAAZE017255 ATGCTTCTCGCTGTATTGTGTGGGAAAAGTTCCCAAATTAAACGGAAGGAGGAGGTCTCACATCAAGGGCCGAGATTTCCCTTCCCGGAGATTGTCTCTTCAGGACGTTTGGAGGTTCAAGTTCTAAATAATCCAAGTACAGATGAGTTTCGTAAAGTTGTTAGTTCTTTTCAGCCAAATCTTGTGTATTTACAAGGAGAACAGCTTCCGAATGATGAAGTTGGGTCTTTGGTATGGGGAGGTGTTGACTTGTCCACTGCTGAAGCCATCTCCGGTCTCTTTAGCACCACAATGCCCACCACTGTTTATCTGGAAGTTCCAAACGGAGAAGAGTTGGCAGAGGCACTTCAATCTAGGGGAATTCCCTATGTGATATATTGGAAGAATACTTTTTCCGGTTACGCCGCTTGCCATTTTCGTCATGCATTATTTTCGGTGGTACAGAGTTCATCTAGCCATACGTGGGATGCATTTCAGCTTGCACATGCATCCTTTAGACTCTACTGTGTACGAAACAACCTTGCCCTGCCGGATAACAACCTGACACATAATGATGAGATTGGTCCACACATTCTTGGAGATCCTCCGAAGATTGATGTTCCTCAACCTGAGGTAGGTGGAGAAGATGACGAAGAAGAAGGCTCTCCTGGTTCTCTTCCTGCAATAAATATATATGACGATGACGTGAACATGAGGTTCCTTGTTTGTGGAGTCGCTTGCACCTTGGACGAATGCTTGTTAGGATCTTTGGAAGATGGACTCAACGCTCTCTTAAGTATTGAAATGCGGGGGAGTAAACTTCATAATCGTGTTAGTGCCCTTCCACCACCTCTTCAGGCAGGGACCTTTTCTCGTGGTGTTGTGACCATGCGATGTGATTTGTCAACGTCTAGTTCTGCCCACATTTCACTTCTGGTGTCGGGTAGTGCACAGACATGCTTTGATGATCAGCTCTTGGAGAATCATATAAAAAGTCAAGTTATTGAGAAGAGTCGATTGGTTCATGCATTGGCAAATAGTGAGGAGAACAAGCCACCTTTATCTGAACCTCGGAGATCGGCTTCAATTGCTTGTGGGGCTACAGTATTTGAAGTTAGCATGAAGGTTCCTACATGGGCCTCACAGATATTGAGGCAGCTAGCTCCAGATGTCTCATATCGTAGTTTAGTTGCGCTTGGCATAGCCAGTGTTCATGGATTGGCAGTTGCTTCTTTTGAGGAGGATGATGCAGAGCGATTCCTTTTCTTCTGTGCAGAAGGGAAAACTCGAAACAATATTCTTCTTAGTATCAGCAACAGTCCTCCACCCACTTGGTTGAGACCACCTGCTCCAAGTAGAAAGAGATCTGAAATGTACCAAGAAACAAGCCATGTTGACCGAGAAGAGGATAAGAAAACTGGGTTCACAAATGGGGTTACTGCACCTTTACAACCTGTAAGAAAGAAATTAAAAGTTGCTGCATTGAGACCTATTCCTCACATTCGTCACCAAAAAATGCTCCCCTTTTCTGGACTTGCTGAGGCCAATGGGCATGATGGAGGAGGCCAATTGAAGGCTAACTTAGTTGTTCCTTCTTCCACAAAGCACAATAGTGGTGGAGCAAATCCTGTTACCCATCATCGAAAATCATTATCAAGCTCATACCAGGCTAAGCAGATTATTTCCTTGAATCCCCTTCCTCTGAAGAAACATGGTTGTGATAGAAGCCCTATTCACGTTTGCTCTGAGGAGGAGTTTCTTAAGGATGTAATGCAGTTTTTAATCCTACGAGGGCATACACGTCTCATTCCTCAAGGTGGGCTTGCCGAATTCCCTGATGCCATACTCAATGCTAAACGTCTTGACCTCTTCAACCTTTATAGAGAGGTGGTTTCAAGGGGTGGCTTTCATGTTGGCAATGGCATCAATTGGAAGGGACAGGTTTTCTCAAAGATGCGCAACCACACAGTCACCAATAGAATGACAGGTGTTGGTAACACGCTTAAAAGACATTACGAGACGTACCTTTTGGAATATGAATTGGCTCATGATGACGTAGATGGAGAGTGCTGCTTGTTGTGCCACAGTAGCGCCGCGGGGGATTGGGTGAACTGTGGGATATGTGGCGAGTGGGCCCATTTTGGGTGCGACAGAAGACAGGGTCTTGGTGCCTTCAAGGATTACGCAAAAACAGATGGGCTAGAATACATTTGTCCACAATGCAGTGTTTCAAATTTCAAGAAGAAACCCCCGAGAAATACAAATGGGTATTCCTGA

Network for GWHGAAZE017235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.22	ARID	576	673	6.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.931
	SRR3591706	second leaf	29.419
	SRR3591707	mature leaf	35.254
	SRR3591708	Shoot apex	36.904
	SRR3591709	Stem	40.355
	SRR3591710	White floral bud	34.622
	SRR3591711	White flower	42.554
	SRR3591712	Green floral bud	36.470
	SRR3591713	Yellow flower	33.109
SRP173429	SRR8316895	Juvenile bud stage	21.669
	SRR8316896	Juvenile bud stage	27.066
	SRR8316897	Juvenile bud stage	13.778
	SRR8316894	Third green stage	12.947
	SRR8316900	Third green stage	36.112
	SRR8316901	Third green stage	33.668
	SRR8316898	Complete white stage	13.449
	SRR8316899	Complete white stage	44.757
	SRR8316903	Complete white stage	22.683
	SRR8316902	Silver flowering stage	11.812
	SRR8316904	Silver flowering stage	19.573
	SRR8316905	Silver flowering stage	9.240
	SRR8316906	Gold flowering stage	32.536
	SRR8316907	Gold flowering stage	30.780
	SRR8316908	Gold flowering stage	34.308
SRP132670	SRR6706286	Control	36.616
	SRR6706287	Light intensity 50%	36.878
	SRR6706288	Light intensity 20%	41.614
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.906
	CNS0095593	Slightly white alabastrum(diploid) 2	20.640
	CNS0095594	Slightly white alabastrum(diploid) 3	17.370
	CNS0095595	Whole white alabastrum(diploid) 2	20.683
	CNS0095596	Whole white alabastrum(diploid) 3	17.106
	CNS0095597	Whole white alabastrum(diploid) 4	17.226
	CNS0095598	Silvery flower (diploied) 1	30.272
	CNS0095599	Silvery flower (diploied) 2	22.766
	CNS0095600	Silvery flower (diploied) 3	36.942
	CNS0095601	Golden flower (diploid) 1	21.647
	CNS0095602	Golden flower (diploid) 2	38.920
	CNS0095603	Golden flower (diploid) 3	37.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.385
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.702
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.825
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.079
	CNS0095610	Silvery flower (tetraploid) 1	38.888
	CNS0095611	Silvery flower (tetraploid) 2	41.343
	CNS0095612	Silvery flower (tetraploid) 3	34.041
	CNS0095613	Golden flower (tetraploid) 1	22.969
	CNS0095614	Golden flower (tetraploid) 2	36.279
	CNS0095615	Golden flower (tetraploid) 3	34.567
CRA001975	CRR073297	Stem 1	39.933
	CRR073298	Stem 2	37.420
	CRR073299	Stem 3	38.580
	CRR073300	Leaf 1	40.521
	CRR073301	Leaf 2	34.726
	CRR073302	Leaf 3	31.804
	CRR073303	Juvenile bud 1	32.728
	CRR073304	Juvenile bud 2	23.326
	CRR073305	Juvenile bud 3	42.326
	CRR073306	Third green 1	18.099
	CRR073307	Third green 2	14.442
	CRR073308	Third green 3	16.166
	CRR073309	Second white 1	15.750
	CRR073310	Second white 2	16.217
	CRR073311	Second white 3	18.667
	CRR073312	Silver flowering 1	17.987
	CRR073313	Silver flowering 2	18.552
	CRR073314	Silver flowering 3	17.628
	CRR073315	Gold flowering 1	17.684
	CRR073316	Gold flowering 2	28.287
	CRR073317	Gold flowering 3	23.639
	CRR073318	Tawny withering 1	26.869
	CRR073319	Tawny withering 2	26.230
	CRR073320	Tawny withering 3	27.047