Gene detail

Detail information of GWHGAAZE017216

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAS21305.1	6.2461E-171	mitogen-activated protein kinase kinase 5 [Petroselinum crispum]
Swissprot	tr\|Q8RXG3\|M2K5_ARATH	5E-157	Mitogen-activated protein kinase kinase 5
trEMBL	tr\|Q6QMT4\|Q6QMT4_PETCR	2E-171	Mitogen-activated protein kinase kinase 5 {ECO:0000313\|EMBL:AAS21305.1}
TAIR10	AT3G21220.1	8E-117	MAP kinase kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2625418	2626573	+
GWHAAZE00000005	mRNA	2625418	2626573	+
GWHAAZE00000005	exon	2625418	2626365	+
GWHAAZE00000005	exon	2626520	2626573	+
GWHAAZE00000005	CDS	2625418	2626365	+
GWHAAZE00000005	CDS	2626520	2626573	+

Transcript Sequence
>GWHTAAZE017236 ATGAACCCGAATCAACCACCCGCCGGCAACAACCGCCAACGCCGTCGTCCCGACCTATACCTACCCCTCCCTAAACGAGACACTTCCTTAGCCGTCCCCCTCCCTCTCCCACCCCCCTCATCCTCCTCTTCACCACCGGTAAACTTCTCCGAACTCGACCGGCTCAACCGGATCGGAAACGGAAGCGGAGGCACAGTTTACAAGGTTCTGCACCGGCCGACCATGAGATACTACGCCCTGAAAGTGATACACGGCAACCACGAGGAATCAGTCCGGCGCCAGATCCGTCGGGAGATAGAGATCCTACGTGGCGTGGACCACCCAAACGTTGTTAAGTGCCACGACCTATTCGATCACGCCGGCGATATCCAAGTCCTACTCGAATACATGGACCGTGGGTCCCTGGAAGGTAACCAATACTCCGAAGCCTCGCTCGCGGATCTGACGCGCCAGGTCCTCTCCGGACTCTTCTACCTCCATAGACGCAAGATAGTCCACAGAGACATAAAACCAGCGAATCTATTGATAAATTCCGAAAGGCAAGTAAAGATTGCGGATTTTGGGGTTTCGAGAATATTGTCACAGACTATGGGGACTTGCAATTCTTCTGTTGGTACAATTGCTTATATGAGTCCAGAAAGGATCAATACGGATCTGAATCACGGCAAGTATGATGGATATGCGGGGGATATATGGAGTTTAGGTGTTAGTATTTTGGAGTTTTATTTGGGCAGATTCCCGTTTGCAGTGGCTAGTACGGGGGATTGGGCTAGCCTTATGATTGCTATATGCATGAATCAACCGCCGGAGGCTCCACCCACGGCGTCAAGGCAGTTCCGGGATTTCATTTCTTGTTGTTTGAAAAGGGATCCGGCCAGGAGGTGGACTGCGGCCCAATTGTTAACCCACCCTTTTGTTGCCGGTGGTGGAATCCATCATCACGTTCAGATCTGGTTTTGCCTTTTTCACCAAGAACATAGAAATAGAATTGGGGAGGATTAA

Network for GWHGAAZE017216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	54	306	2.00E-64

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE7

KEGG pathway

KO	Enzyme	pathway	mapID
K13413	MKK4_5	MAPK signaling pathway - plant	map04016
		Plant hormone signal transduction	map04075
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.117
	SRR3591706	second leaf	13.745
	SRR3591707	mature leaf	14.853
	SRR3591708	Shoot apex	20.827
	SRR3591709	Stem	47.553
	SRR3591710	White floral bud	29.472
	SRR3591711	White flower	31.808
	SRR3591712	Green floral bud	26.371
	SRR3591713	Yellow flower	25.301
SRP173429	SRR8316895	Juvenile bud stage	26.694
	SRR8316896	Juvenile bud stage	24.876
	SRR8316897	Juvenile bud stage	15.886
	SRR8316894	Third green stage	9.703
	SRR8316900	Third green stage	23.921
	SRR8316901	Third green stage	37.546
	SRR8316898	Complete white stage	8.901
	SRR8316899	Complete white stage	42.083
	SRR8316903	Complete white stage	10.493
	SRR8316902	Silver flowering stage	11.936
	SRR8316904	Silver flowering stage	11.722
	SRR8316905	Silver flowering stage	6.713
	SRR8316906	Gold flowering stage	25.945
	SRR8316907	Gold flowering stage	25.112
	SRR8316908	Gold flowering stage	31.889
SRP132670	SRR6706286	Control	18.671
	SRR6706287	Light intensity 50%	18.713
	SRR6706288	Light intensity 20%	17.299
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.741
	CNS0095593	Slightly white alabastrum(diploid) 2	33.751
	CNS0095594	Slightly white alabastrum(diploid) 3	36.799
	CNS0095595	Whole white alabastrum(diploid) 2	29.448
	CNS0095596	Whole white alabastrum(diploid) 3	25.844
	CNS0095597	Whole white alabastrum(diploid) 4	32.044
	CNS0095598	Silvery flower (diploied) 1	29.967
	CNS0095599	Silvery flower (diploied) 2	26.952
	CNS0095600	Silvery flower (diploied) 3	40.306
	CNS0095601	Golden flower (diploid) 1	34.836
	CNS0095602	Golden flower (diploid) 2	40.205
	CNS0095603	Golden flower (diploid) 3	37.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.393
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.930
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.406
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.150
	CNS0095610	Silvery flower (tetraploid) 1	22.966
	CNS0095611	Silvery flower (tetraploid) 2	16.814
	CNS0095612	Silvery flower (tetraploid) 3	39.467
	CNS0095613	Golden flower (tetraploid) 1	26.827
	CNS0095614	Golden flower (tetraploid) 2	30.294
	CNS0095615	Golden flower (tetraploid) 3	24.186
CRA001975	CRR073297	Stem 1	18.300
	CRR073298	Stem 2	24.823
	CRR073299	Stem 3	22.034
	CRR073300	Leaf 1	35.555
	CRR073301	Leaf 2	42.773
	CRR073302	Leaf 3	33.423
	CRR073303	Juvenile bud 1	38.244
	CRR073304	Juvenile bud 2	41.221
	CRR073305	Juvenile bud 3	55.742
	CRR073306	Third green 1	33.569
	CRR073307	Third green 2	27.955
	CRR073308	Third green 3	29.916
	CRR073309	Second white 1	29.976
	CRR073310	Second white 2	27.835
	CRR073311	Second white 3	23.835
	CRR073312	Silver flowering 1	32.438
	CRR073313	Silver flowering 2	35.204
	CRR073314	Silver flowering 3	27.364
	CRR073315	Gold flowering 1	14.991
	CRR073316	Gold flowering 2	18.305
	CRR073317	Gold flowering 3	26.311
	CRR073318	Tawny withering 1	37.803
	CRR073319	Tawny withering 2	35.883
	CRR073320	Tawny withering 3	39.015