Detail information of GWHGAAZE017191


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97732.10unnamed protein product [Coffea canephora]
Swissprottr|C0LGU0|RLK_ARATH0Probable LRR receptor-like serine/threonine-protein kinase RLK (Precursor)
trEMBLtr|A0A068TP08|A0A068TP08_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97732.1}
TAIR10AT5G35390.11E-111Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene20275342030060-
GWHAAZE00000005mRNA20275342030060-
GWHAAZE00000005exon20275342028192-
GWHAAZE00000005exon20283402029116-
GWHAAZE00000005exon20293132030060-
GWHAAZE00000005CDS20293132030060-
GWHAAZE00000005CDS20283402029116-
GWHAAZE00000005CDS20275342028192-
Transcript Sequence

Network for GWHGAAZE017191

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_258999.30E-10
PF13855.7LRR_81522113.60E-09
PF00069.26Pkinase4256903.30E-29
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-III

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005515molecular_functionprotein binding
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.094
SRR3591707mature leaf0.055
SRR3591708Shoot apex0.216
SRR3591709Stem0.401
SRR3591710White floral bud67.895
SRR3591711White flower4.688
SRR3591712Green floral bud8.035
SRR3591713Yellow flower2.696
SRP173429 SRR8316895Juvenile bud stage 0.043
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.041
SRR8316900Third green stage 0.373
SRR8316901Third green stage 0.145
SRR8316898Complete white stage 0.079
SRR8316899Complete white stage 0.295
SRR8316903Complete white stage 0.168
SRR8316902Silver flowering stage0.960
SRR8316904Silver flowering stage2.364
SRR8316905Silver flowering stage0.855
SRR8316906Gold flowering stage 1.300
SRR8316907Gold flowering stage 1.055
SRR8316908Gold flowering stage 0.561
SRP132670SRR6706286Control5.802
SRR6706287Light intensity 50%7.235
SRR6706288Light intensity 20%5.039
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.462
CNS0095593Slightly white alabastrum(diploid) 20.019
CNS0095594Slightly white alabastrum(diploid) 30.600
CNS0095595Whole white alabastrum(diploid) 25.684
CNS0095596Whole white alabastrum(diploid) 33.099
CNS0095597Whole white alabastrum(diploid) 421.266
CNS0095598Silvery flower (diploied) 14.548
CNS0095599Silvery flower (diploied) 216.943
CNS0095600Silvery flower (diploied) 33.021
CNS0095601Golden flower (diploid) 16.154
CNS0095602Golden flower (diploid) 22.502
CNS0095603Golden flower (diploid) 32.443
CNS0095604Slightly white alabastrum(tetraploid) 10.148
CNS0095605Slightly white alabastrum(tetraploid) 20.033
CNS0095606Slightly white alabastrum(tetraploid) 30.041
CNS0095607Whole white alabastrum(tetraploid) 112.683
CNS0095608Whole white alabastrum(tetraploid) 241.032
CNS0095609Whole white alabastrum(tetraploid) 37.543
CNS0095610Silvery flower (tetraploid) 13.683
CNS0095611Silvery flower (tetraploid) 28.463
CNS0095612Silvery flower (tetraploid) 324.198
CNS0095613Golden flower (tetraploid) 13.395
CNS0095614Golden flower (tetraploid) 20.879
CNS0095615Golden flower (tetraploid) 39.840
CRA001975CRR073297Stem 13.055
CRR073298Stem 21.422
CRR073299Stem 30.981
CRR073300Leaf 13.977
CRR073301Leaf 21.692
CRR073302Leaf 31.250
CRR073303Juvenile bud 124.443
CRR073304Juvenile bud 229.880
CRR073305Juvenile bud 36.483
CRR073306Third green 126.850
CRR073307Third green 229.007
CRR073308Third green 324.567
CRR073309Second white 10.975
CRR073310Second white 24.248
CRR073311Second white 36.511
CRR073312Silver flowering 128.473
CRR073313Silver flowering 234.337
CRR073314Silver flowering 314.637
CRR073315Gold flowering 118.198
CRR073316Gold flowering 25.069
CRR073317Gold flowering 36.557
CRR073318Tawny withering 123.916
CRR073319Tawny withering 222.022
CRR073320Tawny withering 321.155