Gene detail

Detail information of GWHGAAZE017190

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077010.1	0	PREDICTED: U-box domain-containing protein 52-like [Sesamum indicum]
Swissprot	tr\|Q9SW11\|PUB35_ARATH	1E-124	Serine/threonine-protein kinase
trEMBL	tr\|F6H2V9\|F6H2V9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46670.1}
TAIR10	AT1G16760.1	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	2002456	2007195	-
GWHAAZE00000005	mRNA	2002456	2007195	-
GWHAAZE00000005	exon	2002456	2003355	-
GWHAAZE00000005	exon	2003499	2003831	-
GWHAAZE00000005	exon	2004447	2004771	-
GWHAAZE00000005	exon	2005325	2005388	-
GWHAAZE00000005	exon	2005529	2005746	-
GWHAAZE00000005	exon	2005941	2006062	-
GWHAAZE00000005	exon	2006389	2006516	-
GWHAAZE00000005	exon	2006617	2006801	-
GWHAAZE00000005	exon	2007155	2007195	-
GWHAAZE00000005	CDS	2007155	2007195	-
GWHAAZE00000005	CDS	2006617	2006801	-
GWHAAZE00000005	CDS	2006389	2006516	-
GWHAAZE00000005	CDS	2005941	2006062	-
GWHAAZE00000005	CDS	2005529	2005746	-
GWHAAZE00000005	CDS	2005325	2005388	-
GWHAAZE00000005	CDS	2004447	2004771	-
GWHAAZE00000005	CDS	2003499	2003831	-
GWHAAZE00000005	CDS	2002456	2003355	-

Transcript Sequence
>GWHTAAZE017210 ATGATGGGTGTGTATGGGCTTTTTGGTTTTTTTGCCCGGGGGGGGGGAGGGGTTAATGGAGATAGGAAAGAAGGTGGTGGAAACAAAGTGGTGGCGATTGCAATAGACAAAAACAAAGGGAGCCAACACGCTCTCAAATGGGCCTCCGACAATCTTCTTACCAGAGGCCAAACTGTCGTCCTCATCTATGTCCTTCACAAATCATCATCTTCCCATTCTTCTCTTCTAATGGGCGGAAACCATGGAGGGGCCGTACGTGATGTGAATGGGGCTGTATCTGTACACAAGGAGTCGCTTGAAAAGCAAACCAAAGAATTGTTCCTTACCTTTCATTGCTTTTGTACACGTAAAGATATACATTGTCTTGATGTCATACTTGAAGATACTGATGTAGCGAAAGCATTGACAGAATACGTTTCTTATTCTGCAATCGAGCACTTGGTTCTTGGTGCCTCATCCCGGCATGGCTTCATCAGAAGATTTAAGGTTTCAGATGTTCCTAGTAACGTCTCGAAAGGTGCACCAGATTTCTGCACTGTTTATGTCATTTCAAAAGGAAAAATCTCTTCTGTTCGGAATGCATCTCGTTCAGCCCCGTTCATTTCCCCCCTGCATGAGCAAATTCAAGAGAAATTCAACAATAGCAATGGCAGTCAGCCAGAATCGCGGCCCAGGCACAGTTTTAGTATGAAAGCATCAGAAATGACACCTCGCAAGCGGCCTCCTCATTTAAGCGATGATGGTCATGAACAATTCAGGTCACCGTTGGCTAGAGGAGGATCAAAAGGAGGTTTAATTGGAAGATTGGGTGGGCTAGATGTTTCAGAATCAGATACAGACATATCGTTTGTGAGCTCTGGACGACCAAGCACTGATCGCTTGTCCACATATAACAATATGATCTACGATAGCATGGATTCAGCCCCAAACTCTCGCAATTCAACAGCAAGCAGCTCTGATCATAGTTTTGTTTCATCCCGGTTGGGAGCAATAGGCAGAGGCATTGATATCAGTCATCTCCATGAATTCTCATCAACCTCATTTGAGAGTGAAAGAACTTCGTGCTCATCGCCAAATGCAGTGGATGACGTGGAGGGTGAAATGAGGAAGCTAAAGTTGGAGCTACAGAAAACGATGGATATGTATAGTACAGCCTGCAAAGAAGCATTAACAGCTAAAGAAAAGGCAACAGAGCTTCATCGATGGCGAGCTGAGGAAGAAAGAAGGTTAGAAGAGGCCCGAGTTGCACAGCAAGCAGCACTAGTAATTGCAGAGAAAGAGAAAGCCAAGTGTAGGGCGGCACTGGAGACAGCAGAGGCAGCTCAGAGAATAGCAGAACTAGAAGCTGAAAGGAGGATAAACGCTGAAATGAAGGCCCTTAAAGAAGCAGAGGAGAGAGATACAGTGCTATTGGGGGTGTTGCGCCCTGATGCTGCTCAAGGAAGGTCCCAGTTTCAACAAGAAGTGGAAGTACTGAGCCGCATGCGACATCCCAATATGGTACTATTACTTGGGGCATGCCCCGAATATGGGTGTCTCATCTACGAATACATGGCTAAGGGAAGCTTGGATGACCGCCTATTCCGCCGGGGGAACACCCGGCCTCTTTCTTGGCAACTCAGATTCCGAATAGCGGCAGAGATAGCAACCGGATTGCTTTTCCTTCACCAAACCAAGCCTGAACCTTTGGTTCACCGTGACCTCAAACCTGCTAACATTTTGCTCGACCATAATTACGTGAGCAAGATAAGCGATGTTGGGTTGGCAAGGCTGGTGCCTCCTTCGGTGGCTGATGATGTCACCCAGTATCGAATGACCTCGACTGCAGGGACTTTCTGTTACATTGATCCGGAGTACCAACAGACTGGAATGCTGGGAGTGAAATCGGACGTGTATTCCTTGGGGGTCATGCTCCTGCAGATAATAACTGCCAAACCCCCCATGGGATTGACTCACCAAGTTGAGCTATCAATTGAGAACGGTACGTTTCCTGAGATGTTGGATCCAGTTGTGGGTGATGACTGGCCGGTTGAGGAGGCCTTGGGTTTTGCAAAGCTGGCCCTCCAATGCGCAGAGCTGAGGCGGAAAGACAGGCCAGATCTTGGGAAAGTAGTTTTGCCAGAGCTTAATAGGTTAAGAGCTCTTGGAGAAGAAAACATGGCCTCCCACTATTTGCTAATGGGTGGTGGTGTTGGTGCTAGTCCTAGTCCCTCCCCCAATCATAGCCAAGTTTCCACGGTCTTCAGCGACCCTTTGGCTGGACATGATCATTCAGGATATGATAGCTCAAAAACCCAATCCATCTCATCACAATAA

Network for GWHGAAZE017190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	28	175	1.40E-08
PF07714.18	PK_Tyr_Ser-Thr	457	702	2.20E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.118
	SRR3591708	Shoot apex	0.097
	SRR3591709	Stem	0.231
	SRR3591710	White floral bud	23.924
	SRR3591711	White flower	1.408
	SRR3591712	Green floral bud	9.113
	SRR3591713	Yellow flower	0.481
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.538
	SRR8316897	Juvenile bud stage	0.225
	SRR8316894	Third green stage	0.467
	SRR8316900	Third green stage	4.960
	SRR8316901	Third green stage	5.037
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.167
	SRR8316903	Complete white stage	0.024
	SRR8316902	Silver flowering stage	0.453
	SRR8316904	Silver flowering stage	0.896
	SRR8316905	Silver flowering stage	0.214
	SRR8316906	Gold flowering stage	0.166
	SRR8316907	Gold flowering stage	0.044
	SRR8316908	Gold flowering stage	0.022
SRP132670	SRR6706286	Control	4.689
	SRR6706287	Light intensity 50%	4.910
	SRR6706288	Light intensity 20%	3.485
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.080
	CNS0095593	Slightly white alabastrum(diploid) 2	3.048
	CNS0095594	Slightly white alabastrum(diploid) 3	2.380
	CNS0095595	Whole white alabastrum(diploid) 2	9.577
	CNS0095596	Whole white alabastrum(diploid) 3	9.946
	CNS0095597	Whole white alabastrum(diploid) 4	11.601
	CNS0095598	Silvery flower (diploied) 1	1.164
	CNS0095599	Silvery flower (diploied) 2	5.216
	CNS0095600	Silvery flower (diploied) 3	1.091
	CNS0095601	Golden flower (diploid) 1	2.193
	CNS0095602	Golden flower (diploid) 2	1.444
	CNS0095603	Golden flower (diploid) 3	1.404
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.064
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.929
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.914
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.683
	CNS0095610	Silvery flower (tetraploid) 1	0.963
	CNS0095611	Silvery flower (tetraploid) 2	4.113
	CNS0095612	Silvery flower (tetraploid) 3	10.299
	CNS0095613	Golden flower (tetraploid) 1	1.368
	CNS0095614	Golden flower (tetraploid) 2	0.077
	CNS0095615	Golden flower (tetraploid) 3	4.232
CRA001975	CRR073297	Stem 1	1.148
	CRR073298	Stem 2	2.096
	CRR073299	Stem 3	1.048
	CRR073300	Leaf 1	6.000
	CRR073301	Leaf 2	5.466
	CRR073302	Leaf 3	2.822
	CRR073303	Juvenile bud 1	13.268
	CRR073304	Juvenile bud 2	16.537
	CRR073305	Juvenile bud 3	1.551
	CRR073306	Third green 1	10.004
	CRR073307	Third green 2	14.253
	CRR073308	Third green 3	11.275
	CRR073309	Second white 1	1.371
	CRR073310	Second white 2	2.968
	CRR073311	Second white 3	2.649
	CRR073312	Silver flowering 1	11.010
	CRR073313	Silver flowering 2	14.925
	CRR073314	Silver flowering 3	6.484
	CRR073315	Gold flowering 1	13.100
	CRR073316	Gold flowering 2	3.318
	CRR073317	Gold flowering 3	6.691
	CRR073318	Tawny withering 1	10.432
	CRR073319	Tawny withering 2	10.927
	CRR073320	Tawny withering 3	8.412