Gene detail

Detail information of GWHGAAZE017186

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	3.0789E-163	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8LKZ8\|RPS2_ARATH	5E-54	Disease resistance protein RPS2
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	1E-163	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT4G26090.1	1E-47	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	1810882	1814602	-
GWHAAZE00000005	mRNA	1810882	1814602	-
GWHAAZE00000005	exon	1810882	1810929	-
GWHAAZE00000005	exon	1811483	1814602	-
GWHAAZE00000005	CDS	1811483	1814602	-
GWHAAZE00000005	CDS	1810882	1810929	-

Transcript Sequence
>GWHTAAZE017206 ATGGCTGAACCTGTAGTAGCAGCAGCAACTATTGTTTCCGGGGTGATGGCGTTAAAACCAGTATGGGATAGATTCAAGGAAGTTTCAAGGGAGATGGAAAAGATTCAGGGAGATTTGACCAACGCAATGCAGAAGTTGTTGGCCAAAAAGAAATCTCATGAGAAAGAGTTACGGTTATGGAACTCTACAAAGATACCATCTGAAGACTACAATAACTGGATTCAAAAAGTGTTTGAGTTGGAAAAAGATGTGACAAATGTATTTGCGAAATACGAAAGAAAAAGAAACAAGTCGAAGTTGTTACATTATATTCCATGTTCAAAGCTATGCAAGAAGATGAAAAGTATGTTAAAAGTGGCAGTTCGCTTGGAGGGCACAGAAGTGGGACACATTTTAGTGCGGAAAGAACCAGATCGTGTTGTGGAGATTAAAGAAGCACCCGATATAAAAAATTTCCCCGCACTTTATGGACCACTGGAGAAGATTTTGGATCTGTTAACGAAAAGGAAATTCAAAGTTATTAAAATACAGGGGCGGATGGGCATGGGGAAGACAACTATAATGCAGACCTTGAACAACCATAAAAATATTGCTGATATGTTTAACATAGTGATTTGGGTGAATGTTTCCTCGGAGGAAGACAAGAGGAATTTCAGCGTTGAGCAAATGCAGCAAAGTATTGTGCGAAGACTAAACCTTGATGTTGAAGGTGCCAGTGATGACAAAGTCGCCGAAAGAATACAGGGAGAGTTACGGGATAAGAAGTGTTTGCTACTTCTGGATGGGGTTAAGGAAGATCTCAAATTAAACCAAATTGGGATTGATCTTAATTATGAGAATGGTAGCAAGTTAGTGTTGACAACTACAGTGGGTCATTTTTTCCACTTGCCTGTGGACAGGGAGGTTAGAATTGAAAGATTATCCGATGAAGAAGCAATATCTATGTTTAAAAAAGTTCTAGGTCCGTCAAAATGTATATCTTGGTCGGTTATGGAACGAGTAGTTAAATGCTGCAACAATTGTCCGTTTGTGATAAAAATGATAGCAAGTGCCTTCAAAAAGAAAGAAACAACGGAGAGCTGGGACCAAGGATATGCAAATTTGATAAGTTTTCCTGATGAGGGTGATGTTGCCATTCAAAAAGTGTATAAATATTTAGAATTTTGTTGTGATCAATTGGAGGGCGCTCAAAAGGATTGCCTTTTGTACTGTGCATTATATCCCGAAGGGAGTGACATTGGTGCAGATTGCTTATTGGATTGTTGGGCAGCTGAAGATTTGTATGGAACTAACAAAGTACGTAACCTTGGGCGTTATATATTGAATGAACTTAAAAAGGTGTCTTTACTGGAGGAGCATGTGTATAGGCATGGAGAATATGTTAGGATGCCAAAATTGATTCGGAAAGTGGCATTGGATAAGTTGTTAGCTGATTGTGAACATAAACATTTGGTGAAAATCAGTGAATCAGTACAAGATGCCCCAAGCATGGAAGACTGGAACCAGAAGAATCGAATTTCGTTGGTTGACAATAAACTGACAACGTTACCTGAGCAGATTGTCCTAATGCTTTCCACACTAATTTTGCAAAGAAATCAAAGTTTGAACAAAATTCCTAACTTTTTCTTTGAGAATGCTGGAAATCTCCGAGTTTTGGACTTGAGTCATACTGGAATCGCATCACTTCCATCTTCACTATGGAAGCTGAAACTTTTGAAAGTCCTGTATCTAAATGATTGCACTTGCTTGGCGAAGCTTCCATCTGAAATTGGAGAACTTGAGTCTCTTCAAGTGCTCGATATAAGAGGCAGTGGCAGTGGGGTTGACAATATACCACCCCAAAATGAGGGTGTGCTCGACGATCCACGTGCCTATTCAAAATTTTTATTCGGAAACTCAAGCCGGTACATGTACACCTCTAACCAAGATAGAGAAATGCGCAATTTGAAGCGGTTGCTGGTTTCGTTCAATAATTTTGGCAATGAAATTGATGCTCAATATATATCACTTTATTGCGATGTCATTTCCAAGATTTCTACTACATTGGAAGAGTTGGTCATTGATGTGAAATCAGACAAGAAGTGTTGTGGTGAGATGATTAATATGGTGAGAGACAAGGTAGCAGCTACCATGACAAAGCTGACAACTCTCAAGTTTTGCTTTGAAGACGGTGTTGAAGATGTCATAAAATTAGTTACTGATACTCCACAAACCTATTATCCCCTAGCAGATGATCTTACAAGTTTTGTTGAAAAATTAGATGGCTCTGCATCCCAATCATTTCAACTTTTCATCAGTTGCTCGATCTCATCACGTCCACGAATTCCGATGCATCACCAGTATAGAAGGTATTTGAAATATTGCGAAGGGAGAGGCTGTAACCATGCTATCAGTGAAGTGCTCGCTATAACTGATGCATTTGAGTTGGTTAACCACAATGACCTTGAGCATGTATCTGAGTTTGGGACAGAAAGCTTGGACAGCATCCAAGGTTTTCTAATTGAAGCTTGCAAGAATATTACTGGAATTGTTGACGGTAATTGTACCATGGACCCACTGCTTCCGAATCTACTGCGTCTATACATAAAGAATTTGCCGAAACTGGGAAGCATTTGGAAAGGTCCCGTGCACCCTTGGAGCTTATTAAAACTGAGGACTTTGGTGATTGATGATTGCCTCAGCATAGAAGAGTTATTTATTGAACCAGCAATTATTGACATCCTCTTAAAACTGAGGAAGCTAGTACTTCTTAATTTGCCAAAATTGACAAGGATTTGCGCAAATGTGTCACCGAAGTGGTCCGCCTTAGAGAAGCTTAAGATAAAAAACTGCCCCAGATTAACAGAGTTCCCTTTCTGCAAAGATAACACAGAGAAGCTGAGGAAGCTAACACTTTGTGGTATGCCGAATTTAGAAATGATTTGTGCATACGAGTCATTCGAATGGCCTGCCTTGGAGAAGCTCAAGATATATGGGTGTCGCAGTTTAACAGAGTTACCTTTCAACAAAGATAATGCGAAGAACTTGAATTTCATTGAAGCAGAGGAAGAATGGTGGAAGGCGTTGCGATGGCAAGACCTTGCAGTGAAACAACGGCTCCAACTTTGCTGCTCCCTACAGCCGATTGACCAAGATGCAACCACCAACACTGGAAATGGTGGCCCTTAA

Network for GWHGAAZE017186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	159	391	1.30E-30
PF13855.7	LRR_8	524	580	2.80E-07

Protein Sequence

>GWHPAAZE017196
MAEPVVAAATIVSGVMALKPVWDRFKEVSREMEKIQGDLTNAMQKLLAKKKSHEKELRLWNSTKIPSEDYNNWIQKVFELEKDVTNVFAKYERKRNKSKLLHYIPCSKLCKKMKSMLKVAVRLEGTEVGHILVRKEPDRVVEIKEAPDIKNFPALYGPLEKILDLLTKRKFKVIKIQGRMGMGKTTIMQTLNNHKNIADMFNIVIWVNVSSEEDKRNFSVEQMQQSIVRRLNLDVEGASDDKVAERIQGELRDKKCLLLLDGVKEDLKLNQIGIDLNYENGSKLVLTTTVGHFFHLPVDREVRIERLSDEEAISMFKKVLGPSKCISWSVMERVVKCCNNCPFVIKMIASAFKKKETTESWDQGYANLISFPDEGDVAIQKVYKYLEFCCDQLEGAQKDCLLYCALYPEGSDIGADCLLDCWAAEDLYGTNKVRNLGRYILNELKKVSLLEEHVYRHGEYVRMPKLIRKVALDKLLADCEHKHLVKISESVQDAPSMEDWNQKNRISLVDNKLTTLPEQIVLMLSTLILQRNQSLNKIPNFFFENAGNLRVLDLSHTGIASLPSSLWKLKLLKVLYLNDCTCLAKLPSEIGELESLQVLDIRGSGSGVDNIPPQNEGVLDDPRAYSKFLFGNSSRYMYTSNQDREMRNLKRLLVSFNNFGNEIDAQYISLYCDVISKISTTLEELVIDVKSDKKCCGEMINMVRDKVAATMTKLTTLKFCFEDGVEDVIKLVTDTPQTYYPLADDLTSFVEKLDGSASQSFQLFISCSISSRPRIPMHHQYRRYLKYCEGRGCNHAISEVLAITDAFELVNHNDLEHVSEFGTESLDSIQGFLIEACKNITGIVDGNCTMDPLLPNLLRLYIKNLPKLGSIWKGPVHPWSLLKLRTLVIDDCLSIEELFIEPAIIDILLKLRKLVLLNLPKLTRICANVSPKWSALEKLKIKNCPRLTEFPFCKDNTEKLRKLTLCGMPNLEMICAYESFEWPALEKLKIYGCRSLTELPFNKDNAKNLNFIEAEEEWWKALRWQDLAVKQRLQLCCSLQPIDQDATTNTGNGGP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.242
	SRR3591706	second leaf	0.277
	SRR3591707	mature leaf	0.195
	SRR3591708	Shoot apex	0.176
	SRR3591709	Stem	0.198
	SRR3591710	White floral bud	1.003
	SRR3591711	White flower	1.359
	SRR3591712	Green floral bud	0.591
	SRR3591713	Yellow flower	0.377
SRP173429	SRR8316895	Juvenile bud stage	0.267
	SRR8316896	Juvenile bud stage	0.256
	SRR8316897	Juvenile bud stage	0.045
	SRR8316894	Third green stage	0.066
	SRR8316900	Third green stage	0.027
	SRR8316901	Third green stage	0.108
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.380
	SRR8316903	Complete white stage	0.147
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.022
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	0.143
	SRR6706287	Light intensity 50%	0.165
	SRR6706288	Light intensity 20%	0.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.289
	CNS0095593	Slightly white alabastrum(diploid) 2	0.520
	CNS0095594	Slightly white alabastrum(diploid) 3	0.448
	CNS0095595	Whole white alabastrum(diploid) 2	0.466
	CNS0095596	Whole white alabastrum(diploid) 3	0.018
	CNS0095597	Whole white alabastrum(diploid) 4	0.186
	CNS0095598	Silvery flower (diploied) 1	1.065
	CNS0095599	Silvery flower (diploied) 2	1.649
	CNS0095600	Silvery flower (diploied) 3	0.205
	CNS0095601	Golden flower (diploid) 1	0.848
	CNS0095602	Golden flower (diploid) 2	0.584
	CNS0095603	Golden flower (diploid) 3	0.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.109
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.287
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.060
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.059
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	0.272
	CNS0095612	Silvery flower (tetraploid) 3	0.217
	CNS0095613	Golden flower (tetraploid) 1	0.177
	CNS0095614	Golden flower (tetraploid) 2	0.096
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	0.377
	CRR073298	Stem 2	0.318
	CRR073299	Stem 3	0.128
	CRR073300	Leaf 1	0.027
	CRR073301	Leaf 2	0.356
	CRR073302	Leaf 3	0.155
	CRR073303	Juvenile bud 1	0.209
	CRR073304	Juvenile bud 2	0.020
	CRR073305	Juvenile bud 3	0.113
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.011
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.054
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.051
	CRR073314	Silver flowering 3	0.016
	CRR073315	Gold flowering 1	0.336
	CRR073316	Gold flowering 2	0.455
	CRR073317	Gold flowering 3	0.343
	CRR073318	Tawny withering 1	2.337
	CRR073319	Tawny withering 2	3.019
	CRR073320	Tawny withering 3	2.761