Gene detail

Detail information of GWHGAAZE017158

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043249.1	5.25449E-44	Beta-hydroxyisobutyryl-CoA hydrolase 1 [Theobroma cacao]
Swissprot	tr\|Q6NMB0\|HIBC3_ARATH	1E-38	Probable 3-hydroxyisobutyryl-CoA hydrolase 3
trEMBL	tr\|A0A061E297\|A0A061E297_THECC	2E-44	Beta-hydroxyisobutyryl-CoA hydrolase 1 {ECO:0000313\|EMBL:EOX99080.1}
TAIR10	AT2G30660.1	5E-33	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	550625	557398	+
GWHAAZE00000005	mRNA	550625	557398	+
GWHAAZE00000005	exon	550625	550717	+
GWHAAZE00000005	exon	551007	551090	+
GWHAAZE00000005	exon	551659	551764	+
GWHAAZE00000005	exon	556966	557026	+
GWHAAZE00000005	exon	557350	557398	+
GWHAAZE00000005	CDS	550625	550717	+
GWHAAZE00000005	CDS	551007	551090	+
GWHAAZE00000005	CDS	551659	551764	+
GWHAAZE00000005	CDS	556966	557026	+
GWHAAZE00000005	CDS	557350	557398	+

Transcript Sequence
>GWHTAAZE017178 ATGAACGAAATAGGGCACTGGACTTTTGGTGCAAGTTTTTACAGAAAGCAACTTACTTTAGACTACTTACTTGGAACATATAAAAAGCCGGTGGTTGCACTCATAAATGGAATTGTAATGGGAGGAGGTGCTGGAATATCCATGCATGCAAGATTTCGAATTGTTACAGAAAACACTGTATTTGCCATGCCGGAAGCATCAATAGGATTATTTCCGGATGTTGGGGCATCTCATTTTTTATCTCGGCTTCCTGGCTTCCTTGGTAACCCTCTGAGAAAATTATATTGGAGATCATCAACATGTGCTTTTCAGGAGAAACTGTTGAAGAAATTTTATCATCATTGGAGGAAGTTTTTGCTAGCAGAGCAGAGAAATGGATCGTTGGTGCGATAA

Network for GWHGAAZE017158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	11	89	5.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.448
	SRR3591710	White floral bud	7.136
	SRR3591711	White flower	0.335
	SRR3591712	Green floral bud	67.268
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.387
	SRR8316896	Juvenile bud stage	17.036
	SRR8316897	Juvenile bud stage	18.552
	SRR8316894	Third green stage	6.748
	SRR8316900	Third green stage	20.955
	SRR8316901	Third green stage	19.593
	SRR8316898	Complete white stage	0.041
	SRR8316899	Complete white stage	0.544
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	26.826
	SRR6706287	Light intensity 50%	29.253
	SRR6706288	Light intensity 20%	35.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.199
	CNS0095593	Slightly white alabastrum(diploid) 2	0.030
	CNS0095594	Slightly white alabastrum(diploid) 3	2.120
	CNS0095595	Whole white alabastrum(diploid) 2	0.569
	CNS0095596	Whole white alabastrum(diploid) 3	1.074
	CNS0095597	Whole white alabastrum(diploid) 4	1.289
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.052
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.393
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.527
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.097
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.826
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.349
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	8.175
	CRR073298	Stem 2	10.612
	CRR073299	Stem 3	8.041
	CRR073300	Leaf 1	7.425
	CRR073301	Leaf 2	6.855
	CRR073302	Leaf 3	16.464
	CRR073303	Juvenile bud 1	0.643
	CRR073304	Juvenile bud 2	2.605
	CRR073305	Juvenile bud 3	0.044
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.037
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000