Detail information of GWHGAAZE017126


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010090509.11.53339E-09hypothetical protein L484_017131 [Morus notabilis]
trEMBLtr|J3L987|J3L987_ORYBR9E-11Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G12040.1}
TAIR10AT4G30330.10.00000004Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9225051292251194-
GWHAAZE00000004mRNA9225051292251194-
GWHAAZE00000004exon9225118992251194-
GWHAAZE00000004exon9225102892251110-
GWHAAZE00000004exon9225088592250930-
GWHAAZE00000004exon9225051292250766-
GWHAAZE00000004CDS9225118992251194-
GWHAAZE00000004CDS9225102892251110-
GWHAAZE00000004CDS9225088592250930-
GWHAAZE00000004CDS9225069292250766-
GWHAAZE00000004three_prime_UTR9225051292250691-
Transcript Sequence

Network for GWHGAAZE017126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.23LSM3299.40E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11097SNRPE, SME Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf71.296
SRR3591706second leaf42.401
SRR3591707mature leaf20.359
SRR3591708Shoot apex95.957
SRR3591709Stem56.619
SRR3591710White floral bud43.792
SRR3591711White flower45.125
SRR3591712Green floral bud57.226
SRR3591713Yellow flower40.778
SRP173429 SRR8316895Juvenile bud stage 34.654
SRR8316896Juvenile bud stage 42.015
SRR8316897Juvenile bud stage 29.183
SRR8316894Third green stage 17.228
SRR8316900Third green stage 62.150
SRR8316901Third green stage 56.324
SRR8316898Complete white stage 21.654
SRR8316899Complete white stage 58.408
SRR8316903Complete white stage 33.737
SRR8316902Silver flowering stage21.600
SRR8316904Silver flowering stage26.387
SRR8316905Silver flowering stage14.849
SRR8316906Gold flowering stage 41.240
SRR8316907Gold flowering stage 38.293
SRR8316908Gold flowering stage 28.596
SRP132670SRR6706286Control49.505
SRR6706287Light intensity 50%41.080
SRR6706288Light intensity 20%41.825
CNP0000432CNS0095592Slightly white alabastrum(diploid) 190.130
CNS0095593Slightly white alabastrum(diploid) 290.813
CNS0095594Slightly white alabastrum(diploid) 383.891
CNS0095595Whole white alabastrum(diploid) 278.678
CNS0095596Whole white alabastrum(diploid) 379.188
CNS0095597Whole white alabastrum(diploid) 464.112
CNS0095598Silvery flower (diploied) 167.076
CNS0095599Silvery flower (diploied) 261.286
CNS0095600Silvery flower (diploied) 343.762
CNS0095601Golden flower (diploid) 148.824
CNS0095602Golden flower (diploid) 245.068
CNS0095603Golden flower (diploid) 344.369
CNS0095604Slightly white alabastrum(tetraploid) 175.566
CNS0095605Slightly white alabastrum(tetraploid) 268.779
CNS0095606Slightly white alabastrum(tetraploid) 386.316
CNS0095607Whole white alabastrum(tetraploid) 156.466
CNS0095608Whole white alabastrum(tetraploid) 252.739
CNS0095609Whole white alabastrum(tetraploid) 365.009
CNS0095610Silvery flower (tetraploid) 148.939
CNS0095611Silvery flower (tetraploid) 247.785
CNS0095612Silvery flower (tetraploid) 342.232
CNS0095613Golden flower (tetraploid) 154.181
CNS0095614Golden flower (tetraploid) 250.060
CNS0095615Golden flower (tetraploid) 333.690
CRA001975CRR073297Stem 124.296
CRR073298Stem 223.148
CRR073299Stem 322.412
CRR073300Leaf 122.012
CRR073301Leaf 222.621
CRR073302Leaf 322.167
CRR073303Juvenile bud 118.716
CRR073304Juvenile bud 214.209
CRR073305Juvenile bud 39.751
CRR073306Third green 14.354
CRR073307Third green 25.710
CRR073308Third green 35.692
CRR073309Second white 13.906
CRR073310Second white 29.560
CRR073311Second white 35.164
CRR073312Silver flowering 14.177
CRR073313Silver flowering 24.495
CRR073314Silver flowering 32.394
CRR073315Gold flowering 111.389
CRR073316Gold flowering 213.904
CRR073317Gold flowering 35.282
CRR073318Tawny withering 118.790
CRR073319Tawny withering 222.195
CRR073320Tawny withering 329.411