Detail information of GWHGAAZE017121


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP33966.10hypothetical protein JCGZ_07537 [Jatropha curcas]
Swissprottr|Q40134|RAD51_SOLLC0DNA repair protein RAD51 homolog
trEMBLtr|A0A067KCL1|A0A067KCL1_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP33966.1}
TAIR10AT5G20850.11E-146RAS associated with diabetes protein 51

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9216463892166802-
GWHAAZE00000004mRNA9216463892166802-
GWHAAZE00000004exon9216668292166802-
GWHAAZE00000004exon9216648492166575-
GWHAAZE00000004exon9216627692166370-
GWHAAZE00000004exon9216608392166196-
GWHAAZE00000004exon9216510192165230-
GWHAAZE00000004exon9216487192164992-
GWHAAZE00000004exon9216463892164761-
GWHAAZE00000004CDS9216668292166802-
GWHAAZE00000004CDS9216648492166575-
GWHAAZE00000004CDS9216627692166370-
GWHAAZE00000004CDS9216608392166196-
GWHAAZE00000004CDS9216510192165230-
GWHAAZE00000004CDS9216487192164992-
GWHAAZE00000004CDS9216463892164761-
Transcript Sequence

Network for GWHGAAZE017121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08423.12Rad51102632.40E-126
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04482RAD51 Homologous recombination map03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:1990426biological_processmitotic recombination-dependent replication fork processing
GO:0006259biological_processDNA metabolic process
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0003684molecular_functiondamaged DNA binding
GO:0000150molecular_functionrecombinase activity
GO:0003690molecular_functiondouble-stranded DNA binding
GO:0003697molecular_functionsingle-stranded DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.179
SRR3591706second leaf15.456
SRR3591707mature leaf9.565
SRR3591708Shoot apex26.953
SRR3591709Stem12.564
SRR3591710White floral bud10.173
SRR3591711White flower13.251
SRR3591712Green floral bud9.938
SRR3591713Yellow flower11.283
SRP173429 SRR8316895Juvenile bud stage 15.739
SRR8316896Juvenile bud stage 19.568
SRR8316897Juvenile bud stage 9.287
SRR8316894Third green stage 6.366
SRR8316900Third green stage 14.877
SRR8316901Third green stage 16.395
SRR8316898Complete white stage 6.608
SRR8316899Complete white stage 19.529
SRR8316903Complete white stage 7.441
SRR8316902Silver flowering stage8.286
SRR8316904Silver flowering stage7.671
SRR8316905Silver flowering stage2.990
SRR8316906Gold flowering stage 11.137
SRR8316907Gold flowering stage 12.812
SRR8316908Gold flowering stage 12.594
SRP132670SRR6706286Control16.902
SRR6706287Light intensity 50%18.468
SRR6706288Light intensity 20%19.760
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.776
CNS0095593Slightly white alabastrum(diploid) 216.536
CNS0095594Slightly white alabastrum(diploid) 315.503
CNS0095595Whole white alabastrum(diploid) 216.679
CNS0095596Whole white alabastrum(diploid) 312.870
CNS0095597Whole white alabastrum(diploid) 414.441
CNS0095598Silvery flower (diploied) 115.652
CNS0095599Silvery flower (diploied) 214.969
CNS0095600Silvery flower (diploied) 312.172
CNS0095601Golden flower (diploid) 119.080
CNS0095602Golden flower (diploid) 213.415
CNS0095603Golden flower (diploid) 311.315
CNS0095604Slightly white alabastrum(tetraploid) 111.978
CNS0095605Slightly white alabastrum(tetraploid) 215.704
CNS0095606Slightly white alabastrum(tetraploid) 312.145
CNS0095607Whole white alabastrum(tetraploid) 114.090
CNS0095608Whole white alabastrum(tetraploid) 215.431
CNS0095609Whole white alabastrum(tetraploid) 311.950
CNS0095610Silvery flower (tetraploid) 110.764
CNS0095611Silvery flower (tetraploid) 211.280
CNS0095612Silvery flower (tetraploid) 37.584
CNS0095613Golden flower (tetraploid) 18.670
CNS0095614Golden flower (tetraploid) 28.490
CNS0095615Golden flower (tetraploid) 39.006
CRA001975CRR073297Stem 121.832
CRR073298Stem 220.125
CRR073299Stem 320.699
CRR073300Leaf 115.125
CRR073301Leaf 220.218
CRR073302Leaf 319.554
CRR073303Juvenile bud 117.190
CRR073304Juvenile bud 211.591
CRR073305Juvenile bud 316.355
CRR073306Third green 17.292
CRR073307Third green 28.980
CRR073308Third green 37.972
CRR073309Second white 16.464
CRR073310Second white 26.847
CRR073311Second white 36.140
CRR073312Silver flowering 15.574
CRR073313Silver flowering 24.951
CRR073314Silver flowering 34.541
CRR073315Gold flowering 122.432
CRR073316Gold flowering 227.351
CRR073317Gold flowering 317.863
CRR073318Tawny withering 125.921
CRR073319Tawny withering 227.846
CRR073320Tawny withering 326.525