Gene detail

Detail information of GWHGAAZE017113

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03039.1	6.20182E-77	unnamed protein product [Coffea canephora]
Swissprot	tr\|P32295\|ARG7_VIGRR	7E-22	Indole-3-acetic acid-induced protein ARG7
trEMBL	tr\|A0A068U4F7\|A0A068U4F7_COFCA	2E-77	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03039.1}
TAIR10	AT3G43120.1	2E-38	SAUR-like auxin-responsive protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	91964040	91965506	+
GWHAAZE00000004	mRNA	91964040	91965506	+
GWHAAZE00000004	exon	91964040	91964510	+
GWHAAZE00000004	exon	91965080	91965506	+
GWHAAZE00000004	CDS	91964040	91964510	+
GWHAAZE00000004	CDS	91965080	91965109	+
GWHAAZE00000004	three_prime_UTR	91965110	91965506	+

Transcript Sequence
>GWHTAAZE017133 ATGGGTGATAACGGGGGAAGCAGGGTTACCGGTATTCGCCAAATCATTAGGCTCAAGGAAATTATCCACAAATGGCAAAGCGTCACAATTGGGTCCAAGGGGATTGGCCTTGGTTCTAATCAACCAAACCATAATGGTATTTCACCGGCCATTATTAAGAGGGTGAGGAGCGGCAATATGATTTGTGATTCGGACGAGGAATGTTGCCCTAGCCCAGAACCCCCACATGATGTCCCCAAAGGCTACTTGGCGGTTTATGTGGGACCAGAGCTTAGGAGGTTTATCATTCCTACTAGCTATCTAAGTGACCCTTTGTTTAAGGTGTTGCTCGAAAAGGTTGAGGAGGAGTTTGGCTTTGATCACAGCGGTGGCCTCACTATACCTTGTGAGATTGAGACCTTCAAGTACCTCTTAAAGTGCATGGAGAACCATGAAAGGGATCATTATGCTGCTGGCAATGGATCTTCCCCGCTGGGACGCCGTTTAACTGATGAGGAGTAAGTAACAGATTGCTGGTGTTATTAGCGTCTGAAATTTTTTTAGAGCTGATTTTATCTGTTGTAAAAGCAAGGTTTCCTTGTAAGCAGATTTGACAATTTTTTTTCTCTATTTTTACCTTGTGTTTTTTTAAAAGTGAAAAAGAACATAGATATGATATATAGTTAGGATCTTTTTAACCCAGAGGCCTTGTTGGAAAATTGTGGGAGCAGTAAAAGCACTTGTGGGGGATTGATCACCTTGTGTGTGTGTGTGTGTGTTTTTTTCTTTTCTTCTTTTTTTGGTTGTAGGGGTTGTCCTACATCTGATGTTTGATTTCACTTGTTACACATTTGTTATTCACTAAACTGTCCATTCTTGTGATTATGACTAAAATTATTTATTGAGCAAATTTTCTAAG

Network for GWHGAAZE017113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02519.15	Auxin_inducible	64	140	7.00E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14488	SAUR	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0009733	biological_process	response to auxin

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.002
	SRR3591706	second leaf	0.094
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.664
	SRR3591709	Stem	1.948
	SRR3591710	White floral bud	14.893
	SRR3591711	White flower	0.262
	SRR3591712	Green floral bud	17.762
	SRR3591713	Yellow flower	0.412
SRP173429	SRR8316895	Juvenile bud stage	2.401
	SRR8316896	Juvenile bud stage	5.560
	SRR8316897	Juvenile bud stage	4.654
	SRR8316894	Third green stage	3.524
	SRR8316900	Third green stage	19.945
	SRR8316901	Third green stage	18.997
	SRR8316898	Complete white stage	2.043
	SRR8316899	Complete white stage	7.428
	SRR8316903	Complete white stage	1.878
	SRR8316902	Silver flowering stage	0.276
	SRR8316904	Silver flowering stage	0.688
	SRR8316905	Silver flowering stage	0.061
	SRR8316906	Gold flowering stage	0.383
	SRR8316907	Gold flowering stage	0.535
	SRR8316908	Gold flowering stage	0.314
SRP132670	SRR6706286	Control	7.709
	SRR6706287	Light intensity 50%	8.660
	SRR6706288	Light intensity 20%	9.011
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.481
	CNS0095593	Slightly white alabastrum(diploid) 2	9.810
	CNS0095594	Slightly white alabastrum(diploid) 3	19.335
	CNS0095595	Whole white alabastrum(diploid) 2	20.307
	CNS0095596	Whole white alabastrum(diploid) 3	26.533
	CNS0095597	Whole white alabastrum(diploid) 4	23.427
	CNS0095598	Silvery flower (diploied) 1	0.360
	CNS0095599	Silvery flower (diploied) 2	3.228
	CNS0095600	Silvery flower (diploied) 3	0.503
	CNS0095601	Golden flower (diploid) 1	0.548
	CNS0095602	Golden flower (diploid) 2	0.463
	CNS0095603	Golden flower (diploid) 3	0.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.697
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.980
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.723
	CNS0095610	Silvery flower (tetraploid) 1	0.361
	CNS0095611	Silvery flower (tetraploid) 2	0.841
	CNS0095612	Silvery flower (tetraploid) 3	1.520
	CNS0095613	Golden flower (tetraploid) 1	0.250
	CNS0095614	Golden flower (tetraploid) 2	1.377
	CNS0095615	Golden flower (tetraploid) 3	1.198
CRA001975	CRR073297	Stem 1	3.104
	CRR073298	Stem 2	2.770
	CRR073299	Stem 3	2.510
	CRR073300	Leaf 1	14.688
	CRR073301	Leaf 2	11.025
	CRR073302	Leaf 3	5.536
	CRR073303	Juvenile bud 1	7.999
	CRR073304	Juvenile bud 2	9.505
	CRR073305	Juvenile bud 3	5.323
	CRR073306	Third green 1	1.990
	CRR073307	Third green 2	4.378
	CRR073308	Third green 3	4.178
	CRR073309	Second white 1	0.475
	CRR073310	Second white 2	0.358
	CRR073311	Second white 3	0.767
	CRR073312	Silver flowering 1	3.296
	CRR073313	Silver flowering 2	2.981
	CRR073314	Silver flowering 3	0.571
	CRR073315	Gold flowering 1	3.934
	CRR073316	Gold flowering 2	2.487
	CRR073317	Gold flowering 3	3.292
	CRR073318	Tawny withering 1	3.041
	CRR073319	Tawny withering 2	5.127
	CRR073320	Tawny withering 3	4.072