Detail information of GWHGAAZE017106


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGH32870.10auxin response factor 5 [Camellia sinensis]
Swissprottr|Q8RYC8|ARFS_ARATH0Auxin response factor 19
trEMBLtr|M4QSM6|M4QSM6_CAMSI0Auxin response factor {ECO:0000256|RuleBase:RU004561}
TAIR10AT1G19220.10auxin response factor 19

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9176262691771647-
GWHAAZE00000004mRNA9176262691771647-
GWHAAZE00000004exon9177152591771647-
GWHAAZE00000004exon9177132491771419-
GWHAAZE00000004exon9177090091770956-
GWHAAZE00000004exon9177038191770536-
GWHAAZE00000004exon9177019091770274-
GWHAAZE00000004exon9176998891770078-
GWHAAZE00000004exon9176948791769651-
GWHAAZE00000004exon9176919991769394-
GWHAAZE00000004exon9176823691768374-
GWHAAZE00000004exon9176603891767656-
GWHAAZE00000004exon9176508991765279-
GWHAAZE00000004exon9176262691763409-
GWHAAZE00000004CDS9177152591771647-
GWHAAZE00000004CDS9177132491771419-
GWHAAZE00000004CDS9177090091770956-
GWHAAZE00000004CDS9177038191770536-
GWHAAZE00000004CDS9177019091770274-
GWHAAZE00000004CDS9176998891770078-
GWHAAZE00000004CDS9176948791769651-
GWHAAZE00000004CDS9176919991769394-
GWHAAZE00000004CDS9176823691768374-
GWHAAZE00000004CDS9176603891767656-
GWHAAZE00000004CDS9176508991765279-
GWHAAZE00000004CDS9176322691763409-
GWHAAZE00000004three_prime_UTR9176262691763225-
Transcript Sequence

Network for GWHGAAZE017106

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B31152161.80E-20
PF06507.14Auxin_resp2413232.00E-36
PF02309.17AUX_IAA9039911.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3-ARF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0009725biological_processresponse to hormone
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.885
SRR3591706second leaf9.198
SRR3591707mature leaf9.165
SRR3591708Shoot apex26.613
SRR3591709Stem37.253
SRR3591710White floral bud9.737
SRR3591711White flower10.620
SRR3591712Green floral bud7.385
SRR3591713Yellow flower5.031
SRP173429 SRR8316895Juvenile bud stage 5.405
SRR8316896Juvenile bud stage 5.743
SRR8316897Juvenile bud stage 3.379
SRR8316894Third green stage 3.737
SRR8316900Third green stage 6.993
SRR8316901Third green stage 6.322
SRR8316898Complete white stage 1.408
SRR8316899Complete white stage 8.374
SRR8316903Complete white stage 5.187
SRR8316902Silver flowering stage3.322
SRR8316904Silver flowering stage6.196
SRR8316905Silver flowering stage2.181
SRR8316906Gold flowering stage 4.640
SRR8316907Gold flowering stage 4.660
SRR8316908Gold flowering stage 5.787
SRP132670SRR6706286Control10.161
SRR6706287Light intensity 50%9.341
SRR6706288Light intensity 20%9.439
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.207
CNS0095593Slightly white alabastrum(diploid) 24.390
CNS0095594Slightly white alabastrum(diploid) 33.397
CNS0095595Whole white alabastrum(diploid) 24.519
CNS0095596Whole white alabastrum(diploid) 32.506
CNS0095597Whole white alabastrum(diploid) 43.267
CNS0095598Silvery flower (diploied) 111.929
CNS0095599Silvery flower (diploied) 26.508
CNS0095600Silvery flower (diploied) 310.150
CNS0095601Golden flower (diploid) 16.322
CNS0095602Golden flower (diploid) 29.373
CNS0095603Golden flower (diploid) 39.584
CNS0095604Slightly white alabastrum(tetraploid) 15.148
CNS0095605Slightly white alabastrum(tetraploid) 23.806
CNS0095606Slightly white alabastrum(tetraploid) 39.534
CNS0095607Whole white alabastrum(tetraploid) 14.445
CNS0095608Whole white alabastrum(tetraploid) 21.609
CNS0095609Whole white alabastrum(tetraploid) 34.404
CNS0095610Silvery flower (tetraploid) 15.945
CNS0095611Silvery flower (tetraploid) 28.607
CNS0095612Silvery flower (tetraploid) 34.758
CNS0095613Golden flower (tetraploid) 12.345
CNS0095614Golden flower (tetraploid) 23.990
CNS0095615Golden flower (tetraploid) 34.074
CRA001975CRR073297Stem 116.991
CRR073298Stem 216.114
CRR073299Stem 310.774
CRR073300Leaf 116.443
CRR073301Leaf 215.406
CRR073302Leaf 37.494
CRR073303Juvenile bud 111.309
CRR073304Juvenile bud 26.345
CRR073305Juvenile bud 322.872
CRR073306Third green 12.527
CRR073307Third green 22.222
CRR073308Third green 34.828
CRR073309Second white 13.175
CRR073310Second white 22.471
CRR073311Second white 33.413
CRR073312Silver flowering 13.598
CRR073313Silver flowering 22.839
CRR073314Silver flowering 33.094
CRR073315Gold flowering 15.505
CRR073316Gold flowering 28.674
CRR073317Gold flowering 36.067
CRR073318Tawny withering 117.464
CRR073319Tawny withering 214.491
CRR073320Tawny withering 319.857