Gene detail

Detail information of GWHGAAZE017095

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAO02531.1	0	predicted receptor-like protein kinase ortholog [Nicotiana alata]
Swissprot	tr\|Q3E991\|Y5269_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 (Precursor)
trEMBL	tr\|U6C2V4\|U6C2V4_NICAL	0	Predicted receptor-like protein kinase ortholog {ECO:0000313\|EMBL:BAO02531.1}
TAIR10	AT3G42880.1	2E-156	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	91560628	91562720	-
GWHAAZE00000004	mRNA	91560628	91562720	-
GWHAAZE00000004	exon	91560628	91561199	-
GWHAAZE00000004	exon	91561424	91562720	-
GWHAAZE00000004	CDS	91561424	91562720	-
GWHAAZE00000004	CDS	91560628	91561199	-

Transcript Sequence
>GWHTAAZE017115 ATGGCCGCTGTTCGACATCCACCCTTTCTTTTTTTATCTCTCCTAATATCATTATTCTCTTATCATTTCTCTCTCACCTCTGCTTCCGATGCCTCTGCCCTCCTCAAGTTTAAAGATACATTCGCCACCAGGGATCCCAAGGCTCTTGATTCATGGAAGCCCGACACTAGTCCTTGTGACCCCAAGAACCGTTGGACCGGAGTTTGGTGTGACGATGGTCGTATTACCGGCCTTCGGCTTAACCACATGGGTCTCTCGGGTGACATAGATTTTCTGCCATTACAAGAACTTCAACACCTTCGTACCATTAGCCTCGAAAACAATTCTTTCACTGGCCCTTTACCTCATTTCTACGATCTCGGCGCTCTAAAGGCCATTTATGCTTCCGTCAACGAGTTCTCTGGTGAAATCCCAGCCGATTTCTTCTCTCGCATGCTTTCTTTGAAGAAGATATGGCTTGCAAAAAACAAATTTACGGGAAATATGCCCGAATCTTTAGGGAAACTAACCCATTTGAAAGAACTTCATTTAGAAAACAATGAATTTTCGGGTCCAATTCCATCGATAGAACAACCATCTTTAACGTCACTTAATCTGTCTAATAATAAATTGGAAGGTCCAATCCCACAAAGCTTGTCTAAATTCGACTCTCGCTCGTTTCAAGGTAACGAAGGGCTATGTGGCCAACAAGTGGGTAATGAATGCAAGGAGCCTCTTAAAGAGCAATCGTCGCACTCCAAGTGGGTGATACTAGGTGTAGTCGTGGTCTTATTATTGTTAACGGTACTATTCAAGGTGAAGCGAAAGGAAGAGAACTTCAATGTATTGGGAAAAGAGAACTTAGATGAGGTGGTATCAGTGCATATACCCAGTGCCAATAGAAGGAGCATGAGTGGAGGGGGAAGCAAAAGAGGAAACCAAGAATCGAACCGTGGTGGCTCCCGGAGAGGAGGTTCGTCCCATCAAGGGAAGTCTGTGGGCGACCTAGTGGTGGTGAACGAAGAAAAGGGAATATTTGGTTTGCAGGATCTGATGAAGGCCGCGGCTGAGGTTCTTGGGAATGGCGGACTGGGGTCTGCTTACAAGGCGGTGATGTCAAATGGGGTGTCCGTGGTGGTAAAGAGATTGAGAGAGGTGAATAAATTGAATAAAGACGCTTTTGATACCGAGATCAGGCGACTAGGGAGATTGAAGCATAAGAACATTTTGACCCCATTGGCGTATCACTATAGAAAAGAGGAGAAGCTCTTGGTATCTGAGTATGTTCCTAAAGGCAGCTTGCTGTATATTTTGCACGGTGATCGCGGGATTTCTCATGCTGAGCTAAATTGGGCTAATCGTCTAAAGATCATTCAAGGAGTTGCTCGAGGAATGGGCTTTCTTCATTCAGTTTTATCCTATGAGTTACCCCACGGGAATCTCAAATCTTGCAATGTTCTTCTTGGTTCAAATTATGAGCCACTTCTCACCGACTACGCCTTCTATCCATTAGTCAATAACACACAAGGCGCGCAGACATTATTTGCTTTCAAATCCCCAGAAGCTATACTATATCAACAGATTTCTCCCAAAAGCGACGTTTACTGTCTTGGAATCATCATTCTGGAAACCCTTACTGGCAAGTTCCCCTCTCAGTATCTCAACAACCAAAAAGGTGGCACGGACGTTGTCCAATGGGTTAGATCTGCTGTTTCTGAGAAGAGAGCCTCAGAGTTGATCGATCCAGAGATATCAGCTGGTGCCAGTGGCGATTCCCTTGAACAAATGGAGAAGCTTCTCAATATCGGAGCTGCATGCACAGAGAGTGATCATGATAAGAGAATCGACATGAAGGAAGCTATCAGGAGGATAGAAGAGATACAAGTATGA

Network for GWHGAAZE017095

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	71	1.10E-09
PF00560.34	LRR_1	193	215	0.08
PF00069.26	Pkinase	350	614	1.30E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.380
	SRR3591706	second leaf	0.309
	SRR3591707	mature leaf	0.546
	SRR3591708	Shoot apex	0.341
	SRR3591709	Stem	0.597
	SRR3591710	White floral bud	44.865
	SRR3591711	White flower	3.876
	SRR3591712	Green floral bud	21.553
	SRR3591713	Yellow flower	1.603
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.088
	SRR8316897	Juvenile bud stage	0.160
	SRR8316894	Third green stage	0.018
	SRR8316900	Third green stage	8.558
	SRR8316901	Third green stage	3.898
	SRR8316898	Complete white stage	0.549
	SRR8316899	Complete white stage	0.119
	SRR8316903	Complete white stage	0.549
	SRR8316902	Silver flowering stage	1.323
	SRR8316904	Silver flowering stage	3.581
	SRR8316905	Silver flowering stage	1.678
	SRR8316906	Gold flowering stage	4.908
	SRR8316907	Gold flowering stage	5.445
	SRR8316908	Gold flowering stage	2.673
SRP132670	SRR6706286	Control	7.718
	SRR6706287	Light intensity 50%	10.091
	SRR6706288	Light intensity 20%	7.221
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.038
	CNS0095593	Slightly white alabastrum(diploid) 2	0.171
	CNS0095594	Slightly white alabastrum(diploid) 3	0.143
	CNS0095595	Whole white alabastrum(diploid) 2	13.366
	CNS0095596	Whole white alabastrum(diploid) 3	13.851
	CNS0095597	Whole white alabastrum(diploid) 4	27.239
	CNS0095598	Silvery flower (diploied) 1	2.693
	CNS0095599	Silvery flower (diploied) 2	11.094
	CNS0095600	Silvery flower (diploied) 3	3.053
	CNS0095601	Golden flower (diploid) 1	2.470
	CNS0095602	Golden flower (diploid) 2	3.081
	CNS0095603	Golden flower (diploid) 3	2.312
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.943
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.038
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.877
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.457
	CNS0095610	Silvery flower (tetraploid) 1	1.680
	CNS0095611	Silvery flower (tetraploid) 2	5.856
	CNS0095612	Silvery flower (tetraploid) 3	12.925
	CNS0095613	Golden flower (tetraploid) 1	1.239
	CNS0095614	Golden flower (tetraploid) 2	0.595
	CNS0095615	Golden flower (tetraploid) 3	7.682
CRA001975	CRR073297	Stem 1	2.064
	CRR073298	Stem 2	1.073
	CRR073299	Stem 3	0.670
	CRR073300	Leaf 1	12.635
	CRR073301	Leaf 2	4.221
	CRR073302	Leaf 3	2.317
	CRR073303	Juvenile bud 1	32.799
	CRR073304	Juvenile bud 2	24.699
	CRR073305	Juvenile bud 3	3.072
	CRR073306	Third green 1	17.024
	CRR073307	Third green 2	18.581
	CRR073308	Third green 3	15.513
	CRR073309	Second white 1	2.694
	CRR073310	Second white 2	6.970
	CRR073311	Second white 3	6.086
	CRR073312	Silver flowering 1	19.411
	CRR073313	Silver flowering 2	18.333
	CRR073314	Silver flowering 3	11.289
	CRR073315	Gold flowering 1	17.062
	CRR073316	Gold flowering 2	5.110
	CRR073317	Gold flowering 3	6.070
	CRR073318	Tawny withering 1	15.974
	CRR073319	Tawny withering 2	14.771
	CRR073320	Tawny withering 3	14.225