Gene detail

Detail information of GWHGAAZE017087

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008242244.1	0	PREDICTED: serine/threonine-protein kinase At5g01020 [Prunus mume]
Swissprot	tr\|Q9CAH1\|Y1725_ARATH	1E-165	Putative receptor-like protein kinase At1g72540
trEMBL	tr\|A0A068U436\|A0A068U436_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03082.1}
TAIR10	AT2G05940.1	5E-175	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	91345822	91348847	+
GWHAAZE00000004	mRNA	91345822	91348847	+
GWHAAZE00000004	exon	91345822	91346199	+
GWHAAZE00000004	exon	91346825	91346960	+
GWHAAZE00000004	exon	91347757	91347893	+
GWHAAZE00000004	exon	91348033	91348156	+
GWHAAZE00000004	exon	91348321	91348847	+
GWHAAZE00000004	CDS	91345822	91346199	+
GWHAAZE00000004	CDS	91346825	91346960	+
GWHAAZE00000004	CDS	91347757	91347893	+
GWHAAZE00000004	CDS	91348033	91348156	+
GWHAAZE00000004	CDS	91348321	91348847	+

Transcript Sequence
>GWHTAAZE017107 ATGGCGGTCAAGAAAATCAAGAATTGGCGCCAAGCTTTAGTACCGGGCTGTTTCTACAGTCATCCATCAGCAAAGCAAAAGAAAATTGCAGCCAAACAGACATCGTTCCCGAGGATTTCCATGTCCGATTTTAGTAATTCTACGCTATCCGAGGATATTTCAAATTCATTAGCTGGATCAAATATTCACGTGTTTACATTAGCAGAGCTTAAGGTGATAACGCAGAGCTTTTCGTCGAGTAATATGCTTGGAGAGGGAGGGTTTGGACCAGTTTATAAAGGATTCATTGATGATAAGCTTAGGCCTTATTTGAAGGCTCAACCTGTTGCTGTTAAGCTTCTTGATTTGGAAGGATTACAAGGTCATAGAGAGTGGCTGACAGAAGTGATATTTCTTGGGCAATTGAGGCATCCACATTTAGTAAAGTTGATTGGTTACTGTTGTGAAGATGAACACAGACTCCTCGTCTACGAATACATGCCACGTGGCAGCTTGGAGAATCAACTATTTAGAAGATACTCAGTATCACTTCCATGGTCGACGAGAATGAAGATTGCTCTTGGAGCAGCAAAGGGACTAGCATTCCTTCATGAAGCTGAAAAACCAGTTATATATCGCGATTTCAAAGCTTCTAACATTTTGCTAGACTCTGATTACACTGCTAAACTCTCGGATTTTGGGCTTGCTAAAGATGGGCCTGGTGAAGATGAAACACATGTCTCCACTCGAGTTATGGGAACACAAGGCTATGCTGCCCCTGAATATGTAATGACAGGTCACTTAACCGCAGCAAGTGATGTTTATAGCTTTGGAGTTGTACTACTGGAGCTTCTAACAGGAAGAAGATCGCTCGACAAAAGCCGGCCCCACAGAGAACAAAACCTAGCCGAGTGGGCCCGGCCATTGCTAAAAGATACGCGAAAGCTAAGCCGGATAATGGACCCTAGGCTTGAAGGGCAGTACTCTGAAGAGGGTGCCTTAAAAGCAGCAGCATTAGCTTACCAATGTCTTAGCCATAGGCCAAAATTGAGACCAACTGTGACCTCAATTGTGAAGACTTTGGAGCCTTTGAAGGATTTTGATGACATCTCAATTGGGACATTTGTGTACACGGCCCCAATTGGAAATGATAAAGAAAATTCAAGAGGAGATATGCATAAGGAAGTGAAAAAAGAGAATGGTACTCCTAGGCATGGGATTAGGTCACCAAAGTCTCCGAGAGTTTCCTTGGAAAACAATTTGAACCAAAAACATAGGAATGGGTTAAATTCTCCCTTGAACAATAGGTACAAAAGAACATAG

Network for GWHGAAZE017087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	80	354	3.50E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.103
	SRR3591706	second leaf	0.224
	SRR3591707	mature leaf	0.452
	SRR3591708	Shoot apex	0.535
	SRR3591709	Stem	0.185
	SRR3591710	White floral bud	0.455
	SRR3591711	White flower	0.899
	SRR3591712	Green floral bud	0.432
	SRR3591713	Yellow flower	3.085
SRP173429	SRR8316895	Juvenile bud stage	0.214
	SRR8316896	Juvenile bud stage	0.827
	SRR8316897	Juvenile bud stage	0.026
	SRR8316894	Third green stage	0.182
	SRR8316900	Third green stage	0.183
	SRR8316901	Third green stage	0.256
	SRR8316898	Complete white stage	0.331
	SRR8316899	Complete white stage	1.226
	SRR8316903	Complete white stage	0.299
	SRR8316902	Silver flowering stage	1.310
	SRR8316904	Silver flowering stage	1.002
	SRR8316905	Silver flowering stage	0.259
	SRR8316906	Gold flowering stage	2.733
	SRR8316907	Gold flowering stage	2.761
	SRR8316908	Gold flowering stage	6.570
SRP132670	SRR6706286	Control	0.793
	SRR6706287	Light intensity 50%	0.475
	SRR6706288	Light intensity 20%	0.273
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.525
	CNS0095593	Slightly white alabastrum(diploid) 2	0.461
	CNS0095594	Slightly white alabastrum(diploid) 3	0.125
	CNS0095595	Whole white alabastrum(diploid) 2	0.397
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.072
	CNS0095598	Silvery flower (diploied) 1	0.687
	CNS0095599	Silvery flower (diploied) 2	0.018
	CNS0095600	Silvery flower (diploied) 3	1.188
	CNS0095601	Golden flower (diploid) 1	1.415
	CNS0095602	Golden flower (diploid) 2	2.313
	CNS0095603	Golden flower (diploid) 3	1.694
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.137
	CNS0095610	Silvery flower (tetraploid) 1	0.594
	CNS0095611	Silvery flower (tetraploid) 2	0.107
	CNS0095612	Silvery flower (tetraploid) 3	0.191
	CNS0095613	Golden flower (tetraploid) 1	1.209
	CNS0095614	Golden flower (tetraploid) 2	1.234
	CNS0095615	Golden flower (tetraploid) 3	0.534
CRA001975	CRR073297	Stem 1	0.040
	CRR073298	Stem 2	0.236
	CRR073299	Stem 3	0.224
	CRR073300	Leaf 1	0.445
	CRR073301	Leaf 2	0.585
	CRR073302	Leaf 3	0.080
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.108
	CRR073305	Juvenile bud 3	0.491
	CRR073306	Third green 1	0.177
	CRR073307	Third green 2	0.005
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.128
	CRR073310	Second white 2	1.175
	CRR073311	Second white 3	1.586
	CRR073312	Silver flowering 1	4.680
	CRR073313	Silver flowering 2	4.196
	CRR073314	Silver flowering 3	2.966
	CRR073315	Gold flowering 1	0.069
	CRR073316	Gold flowering 2	0.065
	CRR073317	Gold flowering 3	0.296
	CRR073318	Tawny withering 1	3.497
	CRR073319	Tawny withering 2	4.792
	CRR073320	Tawny withering 3	2.867