Detail information of GWHGAAZE017067


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009136187.15.7165E-122PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Brassica rapa]
Swissprottr|Q701F9|VPS2A_ARATH5E-123Vacuolar protein sorting-associated protein 2 homolog 1
trEMBLtr|A0A078DW24|A0A078DW24_BRANA2E-122BnaA03g38190D protein {ECO:0000313|EMBL:CDX93097.1}
TAIR10AT2G06530.12E-85SNF7 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9092452490927180+
GWHAAZE00000004mRNA9092452490927180+
GWHAAZE00000004exon9092452490924652+
GWHAAZE00000004exon9092550890925612+
GWHAAZE00000004exon9092596990926229+
GWHAAZE00000004exon9092704090927180+
GWHAAZE00000004CDS9092452490924652+
GWHAAZE00000004CDS9092550890925612+
GWHAAZE00000004CDS9092596990926229+
GWHAAZE00000004CDS9092704090927180+
Transcript Sequence

Network for GWHGAAZE017067

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf741734.00E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12191CHMP2A Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.567
SRR3591706second leaf14.804
SRR3591707mature leaf21.825
SRR3591708Shoot apex6.745
SRR3591709Stem32.438
SRR3591710White floral bud11.192
SRR3591711White flower16.595
SRR3591712Green floral bud6.073
SRR3591713Yellow flower23.075
SRP173429 SRR8316895Juvenile bud stage 6.177
SRR8316896Juvenile bud stage 9.783
SRR8316897Juvenile bud stage 2.530
SRR8316894Third green stage 3.741
SRR8316900Third green stage 10.868
SRR8316901Third green stage 11.684
SRR8316898Complete white stage 11.266
SRR8316899Complete white stage 19.239
SRR8316903Complete white stage 20.403
SRR8316902Silver flowering stage19.147
SRR8316904Silver flowering stage26.849
SRR8316905Silver flowering stage13.519
SRR8316906Gold flowering stage 54.709
SRR8316907Gold flowering stage 35.255
SRR8316908Gold flowering stage 24.946
SRP132670SRR6706286Control13.784
SRR6706287Light intensity 50%12.761
SRR6706288Light intensity 20%12.551
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.637
CNS0095593Slightly white alabastrum(diploid) 211.861
CNS0095594Slightly white alabastrum(diploid) 312.183
CNS0095595Whole white alabastrum(diploid) 211.721
CNS0095596Whole white alabastrum(diploid) 313.715
CNS0095597Whole white alabastrum(diploid) 411.882
CNS0095598Silvery flower (diploied) 112.787
CNS0095599Silvery flower (diploied) 219.436
CNS0095600Silvery flower (diploied) 323.097
CNS0095601Golden flower (diploid) 120.222
CNS0095602Golden flower (diploid) 223.606
CNS0095603Golden flower (diploid) 326.050
CNS0095604Slightly white alabastrum(tetraploid) 12.374
CNS0095605Slightly white alabastrum(tetraploid) 22.174
CNS0095606Slightly white alabastrum(tetraploid) 33.774
CNS0095607Whole white alabastrum(tetraploid) 13.165
CNS0095608Whole white alabastrum(tetraploid) 22.033
CNS0095609Whole white alabastrum(tetraploid) 33.168
CNS0095610Silvery flower (tetraploid) 17.356
CNS0095611Silvery flower (tetraploid) 26.234
CNS0095612Silvery flower (tetraploid) 37.856
CNS0095613Golden flower (tetraploid) 114.227
CNS0095614Golden flower (tetraploid) 27.493
CNS0095615Golden flower (tetraploid) 313.327
CRA001975CRR073297Stem 17.225
CRR073298Stem 27.311
CRR073299Stem 35.912
CRR073300Leaf 18.412
CRR073301Leaf 210.965
CRR073302Leaf 34.990
CRR073303Juvenile bud 110.879
CRR073304Juvenile bud 211.013
CRR073305Juvenile bud 37.428
CRR073306Third green 115.913
CRR073307Third green 213.513
CRR073308Third green 315.146
CRR073309Second white 110.317
CRR073310Second white 218.450
CRR073311Second white 319.591
CRR073312Silver flowering 120.702
CRR073313Silver flowering 217.999
CRR073314Silver flowering 316.720
CRR073315Gold flowering 17.849
CRR073316Gold flowering 29.679
CRR073317Gold flowering 32.483
CRR073318Tawny withering 18.212
CRR073319Tawny withering 28.376
CRR073320Tawny withering 312.346