Detail information of GWHGAAZE017058


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIR10AT3G11200.10.004alfin-like 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene9070905990711593+
GWHAAZE00000004mRNA9070905990711593+
GWHAAZE00000004exon9070905990709089+
GWHAAZE00000004exon9071147590711593+
GWHAAZE00000004CDS9070905990709089+
GWHAAZE00000004CDS9071147590711593+
Transcript Sequence

Network for GWHGAAZE017058

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12165.9Alfin2322.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06560MRC, CD206, CD280 Phagosome map04145

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0042393molecular_functionhistone binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.354
SRR3591706second leaf0.036
SRR3591707mature leaf0.080
SRR3591708Shoot apex1.665
SRR3591709Stem0.014
SRR3591710White floral bud0.410
SRR3591711White flower1.118
SRR3591712Green floral bud1.253
SRR3591713Yellow flower1.076
SRP173429 SRR8316895Juvenile bud stage 6.399
SRR8316896Juvenile bud stage 11.339
SRR8316897Juvenile bud stage 5.621
SRR8316894Third green stage 3.308
SRR8316900Third green stage 9.278
SRR8316901Third green stage 8.697
SRR8316898Complete white stage 0.046
SRR8316899Complete white stage 0.444
SRR8316903Complete white stage 0.152
SRR8316902Silver flowering stage0.864
SRR8316904Silver flowering stage0.634
SRR8316905Silver flowering stage0.657
SRR8316906Gold flowering stage 0.581
SRR8316907Gold flowering stage 1.189
SRR8316908Gold flowering stage 0.737
SRP132670SRR6706286Control12.193
SRR6706287Light intensity 50%10.987
SRR6706288Light intensity 20%9.624
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.240
CNS0095593Slightly white alabastrum(diploid) 24.910
CNS0095594Slightly white alabastrum(diploid) 312.824
CNS0095595Whole white alabastrum(diploid) 26.099
CNS0095596Whole white alabastrum(diploid) 310.703
CNS0095597Whole white alabastrum(diploid) 48.807
CNS0095598Silvery flower (diploied) 11.415
CNS0095599Silvery flower (diploied) 22.217
CNS0095600Silvery flower (diploied) 30.533
CNS0095601Golden flower (diploid) 12.620
CNS0095602Golden flower (diploid) 21.992
CNS0095603Golden flower (diploid) 31.233
CNS0095604Slightly white alabastrum(tetraploid) 18.116
CNS0095605Slightly white alabastrum(tetraploid) 25.997
CNS0095606Slightly white alabastrum(tetraploid) 30.361
CNS0095607Whole white alabastrum(tetraploid) 110.746
CNS0095608Whole white alabastrum(tetraploid) 28.531
CNS0095609Whole white alabastrum(tetraploid) 35.158
CNS0095610Silvery flower (tetraploid) 10.313
CNS0095611Silvery flower (tetraploid) 20.202
CNS0095612Silvery flower (tetraploid) 31.018
CNS0095613Golden flower (tetraploid) 10.036
CNS0095614Golden flower (tetraploid) 20.257
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 19.487
CRR073298Stem 29.167
CRR073299Stem 34.767
CRR073300Leaf 15.837
CRR073301Leaf 25.201
CRR073302Leaf 35.944
CRR073303Juvenile bud 15.899
CRR073304Juvenile bud 26.209
CRR073305Juvenile bud 34.693
CRR073306Third green 12.705
CRR073307Third green 20.153
CRR073308Third green 32.195
CRR073309Second white 12.047
CRR073310Second white 22.727
CRR073311Second white 32.846
CRR073312Silver flowering 11.515
CRR073313Silver flowering 22.513
CRR073314Silver flowering 33.321
CRR073315Gold flowering 10.345
CRR073316Gold flowering 21.640
CRR073317Gold flowering 30.491
CRR073318Tawny withering 10.865
CRR073319Tawny withering 20.267
CRR073320Tawny withering 32.217