Gene detail

Detail information of GWHGAAZE017023

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047876.1	0	Peroxidase superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9SJZ2\|PER17_ARATH	0	Peroxidase 17 (Precursor)
trEMBL	tr\|A0A061DQ02\|A0A061DQ02_THECC	0	Peroxidase superfamily protein {ECO:0000313\|EMBL:EOX92033.1}
TAIR10	AT2G22420.1	9E-145	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	89849065	89852863	+
GWHAAZE00000004	mRNA	89849065	89852863	+
GWHAAZE00000004	exon	89849065	89849244	+
GWHAAZE00000004	exon	89849685	89849876	+
GWHAAZE00000004	exon	89852210	89852863	+
GWHAAZE00000004	CDS	89849065	89849244	+
GWHAAZE00000004	CDS	89849685	89849876	+
GWHAAZE00000004	CDS	89852210	89852863	+

Transcript Sequence
>GWHTAAZE017043 ACTACTACCGGTGGCTCAGCCGGCGCAGCAGCAGCACCGCCACTCCGGCCTGGATTTTACTCGAAAACATGCCCGCGAGCTGAATTGATAGTGCGACAAGTGATGAAAAAGGCCATGATCAGGGAACCCAGAAGTGGTGCCTCTGTTATGCGCTTACAATTCCATGATTGCTTTGTCAATGGTTGTGATGGGTCTTTGTTGATGGATGATACACGAAGTATGTTAGGGGAGAAGGAATCACTATCGAATATAAATTCGTTGAGATCATATGAGGTAATAGATGAAGTGAAGGAAGCCATTGAAGAGGAATGCCCAGGCACTGTTTCTTGTGCAGATATCATCATTATGGCTGCTAGAGATGCCGTTTCTCTGAGTGGAGGTCCCCATTGGGAAGTAAAATTGGGAAGGAAAGATAGTCTAACAGCAAGCCAAGAAGATGCAAACAACATCATGCCGAGCCCGCGTGCCAACGCCACCTCCCTCATCGAACTCTTCGCTAATTTCAACCTCTCGATCAAAGACCTAGTCGCCCTTTCTGGTTCCCACTCGATAGGCAAAGCTAGGTGCTTCTCCATTATGTTTCGGCTATATAACCAATCCGGTTCAGGCAGGCCTGACCCAACTATCGAGCCCAAGTTCCGAGAAAGGCTGGACCGGCTTTGCCCGCTTGGTGGGGACGAAAATGTGACTGGCGATTTGGATGCTACTCCGGAGGTGTTCGATAACCAATATTTTAAGGACTTGGCGAGTGGGAGAGGGTTTTTAAATTCGGACGAAACTTTGTTCACAAATATGAAAACTAGGGAGTTCGTTTTGCAGTTTAGTAGGAGTGAATGTGAGTTCTTCAATGCTTTCGTTGAGGGGATGATTAAGATGGGGGATTTGCAGTCTGGTCGGCCCGGGGAGATTAGAAGGAATTGTAGGGTGGCCAATAGCCGGCCGGTGAATGTATTGTTGGAGGCTTGAGAGAGAGAGAGAGAGAAAATATTAAGTGCTTCTTCTGGAGTATCATATCAGACTAATTGA

Network for GWHGAAZE017023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	31	277	5.70E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.788
	SRR3591706	second leaf	2.814
	SRR3591707	mature leaf	4.465
	SRR3591708	Shoot apex	4.825
	SRR3591709	Stem	14.878
	SRR3591710	White floral bud	32.867
	SRR3591711	White flower	42.788
	SRR3591712	Green floral bud	8.490
	SRR3591713	Yellow flower	5.942
SRP173429	SRR8316895	Juvenile bud stage	19.773
	SRR8316896	Juvenile bud stage	14.334
	SRR8316897	Juvenile bud stage	6.069
	SRR8316894	Third green stage	7.612
	SRR8316900	Third green stage	2.400
	SRR8316901	Third green stage	4.676
	SRR8316898	Complete white stage	0.654
	SRR8316899	Complete white stage	46.210
	SRR8316903	Complete white stage	17.766
	SRR8316902	Silver flowering stage	1.494
	SRR8316904	Silver flowering stage	1.091
	SRR8316905	Silver flowering stage	0.266
	SRR8316906	Gold flowering stage	1.571
	SRR8316907	Gold flowering stage	3.050
	SRR8316908	Gold flowering stage	2.749
SRP132670	SRR6706286	Control	14.290
	SRR6706287	Light intensity 50%	9.269
	SRR6706288	Light intensity 20%	9.522
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.100
	CNS0095593	Slightly white alabastrum(diploid) 2	18.982
	CNS0095594	Slightly white alabastrum(diploid) 3	26.376
	CNS0095595	Whole white alabastrum(diploid) 2	28.218
	CNS0095596	Whole white alabastrum(diploid) 3	1.560
	CNS0095597	Whole white alabastrum(diploid) 4	16.205
	CNS0095598	Silvery flower (diploied) 1	86.859
	CNS0095599	Silvery flower (diploied) 2	42.221
	CNS0095600	Silvery flower (diploied) 3	38.749
	CNS0095601	Golden flower (diploid) 1	86.816
	CNS0095602	Golden flower (diploid) 2	88.070
	CNS0095603	Golden flower (diploid) 3	87.126
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.177
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.342
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.766
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.147
	CNS0095610	Silvery flower (tetraploid) 1	1.718
	CNS0095611	Silvery flower (tetraploid) 2	7.220
	CNS0095612	Silvery flower (tetraploid) 3	0.721
	CNS0095613	Golden flower (tetraploid) 1	0.745
	CNS0095614	Golden flower (tetraploid) 2	5.174
	CNS0095615	Golden flower (tetraploid) 3	1.357
CRA001975	CRR073297	Stem 1	24.303
	CRR073298	Stem 2	23.826
	CRR073299	Stem 3	32.323
	CRR073300	Leaf 1	3.340
	CRR073301	Leaf 2	5.660
	CRR073302	Leaf 3	3.431
	CRR073303	Juvenile bud 1	2.720
	CRR073304	Juvenile bud 2	0.797
	CRR073305	Juvenile bud 3	3.568
	CRR073306	Third green 1	0.514
	CRR073307	Third green 2	0.891
	CRR073308	Third green 3	1.561
	CRR073309	Second white 1	0.381
	CRR073310	Second white 2	0.123
	CRR073311	Second white 3	0.079
	CRR073312	Silver flowering 1	0.114
	CRR073313	Silver flowering 2	0.729
	CRR073314	Silver flowering 3	0.724
	CRR073315	Gold flowering 1	3.083
	CRR073316	Gold flowering 2	5.595
	CRR073317	Gold flowering 3	7.982
	CRR073318	Tawny withering 1	24.384
	CRR073319	Tawny withering 2	21.200
	CRR073320	Tawny withering 3	18.631