Detail information of GWHGAAZE017022


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009344449.12.7595E-148PREDICTED: ras-related protein Rab11D [Pyrus x bretschneideri]
Swissprottr|Q40522|RB11D_TOBAC6E-146Ras-related protein Rab11D
trEMBLtr|A0A061DJB2|A0A061DJB2_THECC4E-148RAB GTPase A4A {ECO:0000313|EMBL:EOX92036.1}
TAIR10AT5G65270.15E-110RAB GTPase homolog A4A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8982816489837451+
GWHAAZE00000004mRNA8982816489837451+
GWHAAZE00000004exon8982816489828399+
GWHAAZE00000004exon8983701089837451+
GWHAAZE00000004CDS8982816489828399+
GWHAAZE00000004CDS8983701089837451+
Transcript Sequence

Network for GWHGAAZE017022

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras201793.80E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf77.679
SRR3591706second leaf24.616
SRR3591707mature leaf3.303
SRR3591708Shoot apex56.560
SRR3591709Stem47.936
SRR3591710White floral bud25.975
SRR3591711White flower24.793
SRR3591712Green floral bud46.921
SRR3591713Yellow flower36.810
SRP173429 SRR8316895Juvenile bud stage 20.678
SRR8316896Juvenile bud stage 35.335
SRR8316897Juvenile bud stage 13.609
SRR8316894Third green stage 15.143
SRR8316900Third green stage 51.244
SRR8316901Third green stage 58.670
SRR8316898Complete white stage 30.118
SRR8316899Complete white stage 78.884
SRR8316903Complete white stage 39.808
SRR8316902Silver flowering stage12.295
SRR8316904Silver flowering stage18.576
SRR8316905Silver flowering stage10.769
SRR8316906Gold flowering stage 38.875
SRR8316907Gold flowering stage 36.984
SRR8316908Gold flowering stage 33.716
SRP132670SRR6706286Control71.403
SRR6706287Light intensity 50%77.904
SRR6706288Light intensity 20%84.181
CNP0000432CNS0095592Slightly white alabastrum(diploid) 146.513
CNS0095593Slightly white alabastrum(diploid) 266.501
CNS0095594Slightly white alabastrum(diploid) 335.689
CNS0095595Whole white alabastrum(diploid) 243.836
CNS0095596Whole white alabastrum(diploid) 342.968
CNS0095597Whole white alabastrum(diploid) 445.368
CNS0095598Silvery flower (diploied) 127.828
CNS0095599Silvery flower (diploied) 234.888
CNS0095600Silvery flower (diploied) 343.878
CNS0095601Golden flower (diploid) 131.296
CNS0095602Golden flower (diploid) 249.592
CNS0095603Golden flower (diploid) 348.905
CNS0095604Slightly white alabastrum(tetraploid) 136.135
CNS0095605Slightly white alabastrum(tetraploid) 228.708
CNS0095606Slightly white alabastrum(tetraploid) 368.893
CNS0095607Whole white alabastrum(tetraploid) 123.124
CNS0095608Whole white alabastrum(tetraploid) 224.993
CNS0095609Whole white alabastrum(tetraploid) 333.739
CNS0095610Silvery flower (tetraploid) 141.542
CNS0095611Silvery flower (tetraploid) 230.792
CNS0095612Silvery flower (tetraploid) 343.520
CNS0095613Golden flower (tetraploid) 144.399
CNS0095614Golden flower (tetraploid) 255.939
CNS0095615Golden flower (tetraploid) 319.743
CRA001975CRR073297Stem 146.026
CRR073298Stem 247.949
CRR073299Stem 355.625
CRR073300Leaf 174.583
CRR073301Leaf 267.462
CRR073302Leaf 385.344
CRR073303Juvenile bud 186.390
CRR073304Juvenile bud 298.422
CRR073305Juvenile bud 372.051
CRR073306Third green 155.782
CRR073307Third green 255.517
CRR073308Third green 347.623
CRR073309Second white 146.053
CRR073310Second white 232.729
CRR073311Second white 314.099
CRR073312Silver flowering 124.016
CRR073313Silver flowering 226.982
CRR073314Silver flowering 321.113
CRR073315Gold flowering 16.735
CRR073316Gold flowering 24.692
CRR073317Gold flowering 39.830
CRR073318Tawny withering 171.285
CRR073319Tawny withering 250.712
CRR073320Tawny withering 375.079