Gene detail

Detail information of GWHGAAZE017013

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009794953.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Nicotiana sylvestris]
Swissprot	tr\|C0LGT1\|Y5129_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (Precursor)
trEMBL	tr\|A0A061DIJ1\|A0A061DIJ1_THECC	Leucine-rich repeat transmembrane protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOX92077.1}
TAIR10	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	89635906	89647930	-
GWHAAZE00000004	mRNA	89635906	89647930	-
GWHAAZE00000004	exon	89647790	89647930	-
GWHAAZE00000004	exon	89646031	89646201	-
GWHAAZE00000004	exon	89644836	89644968	-
GWHAAZE00000004	exon	89644632	89644703	-
GWHAAZE00000004	exon	89641729	89641878	-
GWHAAZE00000004	exon	89641575	89641646	-
GWHAAZE00000004	exon	89641036	89641101	-
GWHAAZE00000004	exon	89640799	89640863	-
GWHAAZE00000004	exon	89640563	89640709	-
GWHAAZE00000004	exon	89638756	89639097	-
GWHAAZE00000004	exon	89637030	89637424	-
GWHAAZE00000004	exon	89635906	89636255	-
GWHAAZE00000004	five_prime_UTR	89647790	89647930	-
GWHAAZE00000004	five_prime_UTR	89646098	89646201	-
GWHAAZE00000004	CDS	89646031	89646097	-
GWHAAZE00000004	CDS	89644836	89644968	-
GWHAAZE00000004	CDS	89644632	89644703	-
GWHAAZE00000004	CDS	89641729	89641878	-
GWHAAZE00000004	CDS	89641575	89641646	-
GWHAAZE00000004	CDS	89641036	89641101	-
GWHAAZE00000004	CDS	89640799	89640863	-
GWHAAZE00000004	CDS	89640563	89640709	-
GWHAAZE00000004	CDS	89638756	89639097	-
GWHAAZE00000004	CDS	89637030	89637424	-
GWHAAZE00000004	CDS	89635941	89636255	-
GWHAAZE00000004	three_prime_UTR	89635906	89635940	-

Transcript Sequence
>GWHTAAZE017033 TCTGAACTTATTGCAGACTTAAAAATTAATTAATTACATGGTAAACTTACACGGGCCATAATGACGAGAATCATCTCCTAGATTTGCTTTCCTGGGGATACAGTTGTTTTTAATGCCCCCCACTTTGATCTTCCTCAAAAGGGATCGTGCTCACTCATGCTTTTAAAGGGGACGACACAATACATTACATTGCTCACTATGAATAGTGTTTCAACTTGAGAACCAAGAAGTAGGAGTCCTTGACGATGGAACTGCTTTTTTTGGTTCTAATATTCACATGTTTGCCTCCTTTTGTAATGCCTGATGCCCAAGGTACCGCACTCTTTGCATTGAAGACTTCGCTGCAAGCTTTATCTACTCAGCTCAGAGATTGGGAACCTAATCGAGTTAACCCATGTACATGGTCCAAAGTTAACTGTGACCCTAACAATAACGTCATTTCCGTATCGTTGGCATCCATGGGATTTTCTGGAGTCCTGTCTCCTCAAATTGGAGGTCTAAAGAGTCTTCAATCACTTTCATTGCAGGGAAATCGCATAAAGGGTGAGATACCAGAAGAATTTGGGAATTTGACTAGCTTAATAATGCTGGATTTGGAAAATAATCTCCTAACTGGAGAAATACCATCTTCCCTTGGCAATCTTACGAAGCTTCAATCATTGCAAGTGTTTTTGAATCAAAACAATCTCACCGGGGCAATACCTGAGTCATTTTCACAGCTTCCAAACTTGAGCACCCTCCGGCTTGATTCGAACAATCTCAGTGGTCAAATACCTGATAATTTATTTCAAGTTTCAAATTACAATCTTACAGGAAACCAATTGAATTGTGGCAATAATTTCACCCAGCTTTGTGTATCTTATCCTGGAGGTTCTTCAAGTAAACCAAAAACAAGACTTATAGTTGGGATTGTTAGTGGACTTGTGGGTCTTTTTCTTCTTCTTGGATGCTTGCTGTTATGTCTGTGGAAGTCTTGGCATGGCGGCTCCAAGCGTGATGTTTTTGTGGACGTTGAAGGGGAATTTGACCAAAGAATTACATTTGGTCAATTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCTACAGATAACTTCAGCGAGAAAAATGTACTTGGACAGGGTGGTTTTGGGAAGGTTTATAAAGGATTGCTTGCTGATAATACAAGAGTTGCAGTTAAACGATTAACTGATTTTGAGAGCCCAGGTGGAGATGCAGCGTTCCAGCGCGAAGTCGAGATGATAAGTGTGGCTGTTCATAGACATCTTTTAAAGCTCATTGGTTTCTGCACCACCCCAACTGAACGCCTTTTGGTGTATCCTTATATGCAAAACTTGAGTGTTGCGTATCGTCTAAGAGAGATTAAAGCTGGGGAACCTATTTTGGATTGGTCCACAAGAAAGCGAGTGGCTTTAGGCACAGCACGGGGACTTGAGTACCTACATGAACATTGTAATCCCAAGATTATTCACCGGGATGTTAAGGCCGCTAATGTATTGCTTGATGAGGATTTTGAAGCCATTGTGGGTGACTTTGGCCTTGCAAAATTGGTTGATGTGAGAAAGACTAATGTGACAACCCAAGTTCGAGGTACAATGGGCCACATAGCTCCTGAATATCTGTCAACTGGGAAGTCATCGGAACGGACAGATGTGTTTGGTTATGGGATTATGCTTCTAGAACTCGTAACTGGTCAACGGGCTATTGACTTTTCCCGCTTGGAGAAAGAAGATGATGTCCTATTGCTTGACCTTGTCAAGAAACTAGAAAGGGAGAAAAACCTAGACACGATCGTAGACCGGAACCTAAACGGAGAATACAACATCGAAGAAGTGGAGAAGATGATTCAGGTAGCGTTGCTCTGCACCCAAGGCTCACCGGAGGACCGGCCGGCAATGTCAGATGTGGTCCGTATGCTAGAAGGAGAAGGGCTCGCTGAGAGGTGGGAAGAATGGCAACATGATGAAGTTAACCGTAGGCACGAGTTTGAAAGACTACAAAGAAGATTTGATTGGGTTGAAGACTCAATCTATAAACAAGAGGCAATAGAGTTATCTGGTGGAAGATAAGGTAGCGGATAAACCCTAGGTATTGGGCTCCTAAA

Network for GWHGAAZE017013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	19	59	2.20E-07
PF13855.7	LRR_8	87	144	7.50E-08
PF00069.26	Pkinase	285	556	2.30E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.774
	SRR3591706	second leaf	14.911
	SRR3591707	mature leaf	20.526
	SRR3591708	Shoot apex	20.147
	SRR3591709	Stem	45.600
	SRR3591710	White floral bud	29.078
	SRR3591711	White flower	36.367
	SRR3591712	Green floral bud	23.596
	SRR3591713	Yellow flower	27.057
SRP173429	SRR8316895	Juvenile bud stage	17.190
	SRR8316896	Juvenile bud stage	23.205
	SRR8316897	Juvenile bud stage	11.522
	SRR8316894	Third green stage	10.577
	SRR8316900	Third green stage	26.132
	SRR8316901	Third green stage	26.117
	SRR8316898	Complete white stage	14.102
	SRR8316899	Complete white stage	39.871
	SRR8316903	Complete white stage	24.702
	SRR8316902	Silver flowering stage	12.891
	SRR8316904	Silver flowering stage	21.433
	SRR8316905	Silver flowering stage	9.968
	SRR8316906	Gold flowering stage	34.110
	SRR8316907	Gold flowering stage	30.257
	SRR8316908	Gold flowering stage	35.152
SRP132670	SRR6706286	Control	23.201
	SRR6706287	Light intensity 50%	24.487
	SRR6706288	Light intensity 20%	25.151
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.061
	CNS0095593	Slightly white alabastrum(diploid) 2	17.814
	CNS0095594	Slightly white alabastrum(diploid) 3	14.775
	CNS0095595	Whole white alabastrum(diploid) 2	14.539
	CNS0095596	Whole white alabastrum(diploid) 3	12.091
	CNS0095597	Whole white alabastrum(diploid) 4	11.826
	CNS0095598	Silvery flower (diploied) 1	24.202
	CNS0095599	Silvery flower (diploied) 2	18.204
	CNS0095600	Silvery flower (diploied) 3	26.296
	CNS0095601	Golden flower (diploid) 1	21.990
	CNS0095602	Golden flower (diploid) 2	28.460
	CNS0095603	Golden flower (diploid) 3	27.135
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.485
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.370
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.383
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.619
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.983
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.145
	CNS0095610	Silvery flower (tetraploid) 1	26.291
	CNS0095611	Silvery flower (tetraploid) 2	21.897
	CNS0095612	Silvery flower (tetraploid) 3	20.227
	CNS0095613	Golden flower (tetraploid) 1	14.671
	CNS0095614	Golden flower (tetraploid) 2	23.327
	CNS0095615	Golden flower (tetraploid) 3	16.003
CRA001975	CRR073297	Stem 1	19.859
	CRR073298	Stem 2	19.853
	CRR073299	Stem 3	10.694
	CRR073300	Leaf 1	27.761
	CRR073301	Leaf 2	22.670
	CRR073302	Leaf 3	13.980
	CRR073303	Juvenile bud 1	16.731
	CRR073304	Juvenile bud 2	11.820
	CRR073305	Juvenile bud 3	15.568
	CRR073306	Third green 1	12.133
	CRR073307	Third green 2	10.146
	CRR073308	Third green 3	11.196
	CRR073309	Second white 1	7.434
	CRR073310	Second white 2	13.291
	CRR073311	Second white 3	9.677
	CRR073312	Silver flowering 1	6.875
	CRR073313	Silver flowering 2	5.853
	CRR073314	Silver flowering 3	6.715
	CRR073315	Gold flowering 1	9.018
	CRR073316	Gold flowering 2	13.719
	CRR073317	Gold flowering 3	6.136
	CRR073318	Tawny withering 1	28.987
	CRR073319	Tawny withering 2	38.592
	CRR073320	Tawny withering 3	28.525