Gene detail

Detail information of GWHGAAZE016987

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090520.1	8.79395E-91	PREDICTED: ethylene-responsive transcription factor ERF060 [Sesamum indicum]
Swissprot	tr\|O65665\|ERF60_ARATH	7E-71	Ethylene-responsive transcription factor ERF060
trEMBL	tr\|A2V670\|A2V670_DAUCA	2E-87	Embryonic element binding Factor 7 {ECO:0000313\|EMBL:BAF47193.1} (Fragment)
TAIR10	AT4G39780.1	6E-41	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	88525874	88526932	+
GWHAAZE00000004	mRNA	88525874	88526932	+
GWHAAZE00000004	exon	88525874	88525999	+
GWHAAZE00000004	exon	88526231	88526680	+
GWHAAZE00000004	exon	88526729	88526932	+
GWHAAZE00000004	CDS	88525874	88525999	+
GWHAAZE00000004	CDS	88526231	88526680	+
GWHAAZE00000004	CDS	88526729	88526932	+

Transcript Sequence
>GWHTAAZE017007 ATGGCAGCAGCTATAGATTTATACAGTAGCAGCCCAATTTTCTCAGATCCATTCAATGAAGAGCTAATGAAAGCACTTAAACCTTTTATGAAAAGTGCTGTTCACTCTTCATCTTCTCCCTCCCTCAGTTCACCCCAAATTGCATTGCAATCGAATTATCATAAAAAACCCTTCAATTTCCTCGGCCCAAGCCCGGTTCCGATGAAGGTTACCGGAGCTCCGGCGAAGCCGAAACTCTACCGGGGAGTGAGGCAGAGACATTGGGGCAAATGGGTTGCGGAGATTCGGCTCCCGAAGAATCGGACCCGGCTTTGGCTTGGAACTTTCGATACGGCTGAAGAGGCGGCTCTGGCTTACGACAGAGCCGCTTATAAGCTGAGAGGGGACTTTGCGAGGCTGAATTTTCCGAATCTGAAGCACCAAATCGCCGATGAATTCTCTGATTTCAAGCCTCTCCACGCCACAGTCGACGCCAAGCTTCAAGCTATTTGCCAAAACTTGGCTAACGGGAGCTCCGGCAAGGCCAAATCATCGGTGGAATCGAAGAAGCCGAGTGCTGTTCCTCTGGCACACCAGAACATCAAGGTGGAGCCCACCAGTTCTTCACCGGCGACGTCTCCGTCTCCGTCCGGTGAATTGTCAGGTGGGTCTTCTCCGGAATCTGGGATTAGTTTCTTGGATTTCAGCGAGCCTTCGTTTGATGATTGTGAGAACTTTGAGTTGGAAAAGTTTCCGTCGGTTGAGATAGATTGGGAAGCTTTGTCATCTTCTTTGGCATAA

Network for GWHGAAZE016987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	80	128	2.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.102
	SRR3591706	second leaf	60.412
	SRR3591707	mature leaf	196.943
	SRR3591708	Shoot apex	78.099
	SRR3591709	Stem	97.912
	SRR3591710	White floral bud	193.699
	SRR3591711	White flower	239.356
	SRR3591712	Green floral bud	166.067
	SRR3591713	Yellow flower	264.166
SRP173429	SRR8316895	Juvenile bud stage	18.443
	SRR8316896	Juvenile bud stage	28.625
	SRR8316897	Juvenile bud stage	10.152
	SRR8316894	Third green stage	16.142
	SRR8316900	Third green stage	51.384
	SRR8316901	Third green stage	50.415
	SRR8316898	Complete white stage	32.528
	SRR8316899	Complete white stage	49.336
	SRR8316903	Complete white stage	73.290
	SRR8316902	Silver flowering stage	41.025
	SRR8316904	Silver flowering stage	50.357
	SRR8316905	Silver flowering stage	25.872
	SRR8316906	Gold flowering stage	110.241
	SRR8316907	Gold flowering stage	114.637
	SRR8316908	Gold flowering stage	122.713
SRP132670	SRR6706286	Control	44.254
	SRR6706287	Light intensity 50%	42.519
	SRR6706288	Light intensity 20%	37.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.606
	CNS0095593	Slightly white alabastrum(diploid) 2	46.524
	CNS0095594	Slightly white alabastrum(diploid) 3	41.826
	CNS0095595	Whole white alabastrum(diploid) 2	30.885
	CNS0095596	Whole white alabastrum(diploid) 3	43.721
	CNS0095597	Whole white alabastrum(diploid) 4	40.619
	CNS0095598	Silvery flower (diploied) 1	58.160
	CNS0095599	Silvery flower (diploied) 2	54.111
	CNS0095600	Silvery flower (diploied) 3	76.668
	CNS0095601	Golden flower (diploid) 1	65.944
	CNS0095602	Golden flower (diploid) 2	121.133
	CNS0095603	Golden flower (diploid) 3	107.981
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.159
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.804
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.745
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.906
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.547
	CNS0095610	Silvery flower (tetraploid) 1	85.501
	CNS0095611	Silvery flower (tetraploid) 2	104.142
	CNS0095612	Silvery flower (tetraploid) 3	155.004
	CNS0095613	Golden flower (tetraploid) 1	245.814
	CNS0095614	Golden flower (tetraploid) 2	149.814
	CNS0095615	Golden flower (tetraploid) 3	558.105
CRA001975	CRR073297	Stem 1	91.261
	CRR073298	Stem 2	101.928
	CRR073299	Stem 3	99.767
	CRR073300	Leaf 1	108.320
	CRR073301	Leaf 2	115.615
	CRR073302	Leaf 3	87.899
	CRR073303	Juvenile bud 1	60.051
	CRR073304	Juvenile bud 2	47.319
	CRR073305	Juvenile bud 3	70.297
	CRR073306	Third green 1	62.260
	CRR073307	Third green 2	69.730
	CRR073308	Third green 3	61.736
	CRR073309	Second white 1	45.443
	CRR073310	Second white 2	47.460
	CRR073311	Second white 3	68.377
	CRR073312	Silver flowering 1	78.286
	CRR073313	Silver flowering 2	54.973
	CRR073314	Silver flowering 3	32.208
	CRR073315	Gold flowering 1	76.608
	CRR073316	Gold flowering 2	116.748
	CRR073317	Gold flowering 3	65.145
	CRR073318	Tawny withering 1	185.376
	CRR073319	Tawny withering 2	125.045
	CRR073320	Tawny withering 3	139.749