Gene detail

Detail information of GWHGAAZE016964

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766139.1	4.6507E-122	PREDICTED: gamma-glutamyltranspeptidase 1-like [Nicotiana sylvestris]
Swissprot	tr\|Q8VYW6\|GAGT1_ARATH	1E-106	Gamma-glutamyltranspeptidase 1 (Precursor)
trEMBL	tr\|M1CYB5\|M1CYB5_SOLTU	4E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400077373}
TAIR10	AT4G39640.2	1E-81	gamma-glutamyl transpeptidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87875257	87876476	+
GWHAAZE00000004	mRNA	87875257	87876476	+
GWHAAZE00000004	exon	87875257	87875288	+
GWHAAZE00000004	exon	87875422	87875686	+
GWHAAZE00000004	exon	87875780	87875917	+
GWHAAZE00000004	exon	87876255	87876476	+
GWHAAZE00000004	CDS	87875257	87875288	+
GWHAAZE00000004	CDS	87875422	87875686	+
GWHAAZE00000004	CDS	87875780	87875917	+
GWHAAZE00000004	CDS	87876255	87876476	+

Transcript Sequence
>GWHTAAZE016984 ATGACCTTCAGCCCCCCTCACTATGGTGGCAAGTGGAATCAAATTCATGATCATGGTACAAGCCACTTATCCATTATAGACATGGAAAGAAATGCTGTTTCTATGACTAGTACTGTCAACTCATATTTTGGCTCCCAATTTTTATCCCCAAGTACCGGAATTTTGCTTAACAATGAAATGGATGATTTTTCCATTCCTATGAATATTTCTGCCGGAGGTCCGCCTCCAGCACCAGCGGATTTTATTGTTCCAGGCAAAAGACCGTTGTCAAGCATGTCACCTAGTATTGTCCTAAAGGGTGAAAAATTGAAAGCCGTCATAGGAGCAAGTGGAGGAGCAATGATAATTGCCGCAACAACTGAGGTGTTCCTCAATCATTTTGCTAGGGGATTGAATCCACTCTCGTCTGTGATGGCTCCGAGATTATATCACCAGCTGATACCTAACGTGTTACATTATGAGAATTGGACAACAGTGACGGGAGATCACTTTGAAGTACCAGCAGAGATAAGAGCAGCCCTAGAAAAGAGGGGACATGTCCTAGAAAGCCTTGGTGGGGGGACTATTTGCCAATTTATACTTCAAGATGATTCAGAGAGAGGGGCCCTTGTGGCAGTAAGTGACCCAAGAAAGGGTGGGTTTCCCTCTGGTTTTTGA

Network for GWHGAAZE016964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01019.22	G_glu_transpept	6	213	1.50E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18592	GGT1_5, CD224	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Taurine and hypotaurine metabolism	map00430
		Cyanoamino acid metabolism	map00460
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	3.334
	SRR3591707	mature leaf	14.076
	SRR3591708	Shoot apex	0.491
	SRR3591709	Stem	0.487
	SRR3591710	White floral bud	23.037
	SRR3591711	White flower	57.230
	SRR3591712	Green floral bud	6.433
	SRR3591713	Yellow flower	106.701
SRP173429	SRR8316895	Juvenile bud stage	5.523
	SRR8316896	Juvenile bud stage	8.712
	SRR8316897	Juvenile bud stage	3.649
	SRR8316894	Third green stage	1.815
	SRR8316900	Third green stage	3.133
	SRR8316901	Third green stage	3.251
	SRR8316898	Complete white stage	3.812
	SRR8316899	Complete white stage	3.620
	SRR8316903	Complete white stage	6.001
	SRR8316902	Silver flowering stage	14.321
	SRR8316904	Silver flowering stage	19.626
	SRR8316905	Silver flowering stage	8.109
	SRR8316906	Gold flowering stage	40.793
	SRR8316907	Gold flowering stage	31.176
	SRR8316908	Gold flowering stage	45.914
SRP132670	SRR6706286	Control	7.429
	SRR6706287	Light intensity 50%	6.323
	SRR6706288	Light intensity 20%	4.534
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.285
	CNS0095593	Slightly white alabastrum(diploid) 2	2.317
	CNS0095594	Slightly white alabastrum(diploid) 3	13.350
	CNS0095595	Whole white alabastrum(diploid) 2	1.928
	CNS0095596	Whole white alabastrum(diploid) 3	1.931
	CNS0095597	Whole white alabastrum(diploid) 4	1.730
	CNS0095598	Silvery flower (diploied) 1	24.300
	CNS0095599	Silvery flower (diploied) 2	21.507
	CNS0095600	Silvery flower (diploied) 3	34.903
	CNS0095601	Golden flower (diploid) 1	32.947
	CNS0095602	Golden flower (diploid) 2	34.963
	CNS0095603	Golden flower (diploid) 3	34.899
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.622
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.667
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.454
	CNS0095610	Silvery flower (tetraploid) 1	64.274
	CNS0095611	Silvery flower (tetraploid) 2	48.719
	CNS0095612	Silvery flower (tetraploid) 3	43.492
	CNS0095613	Golden flower (tetraploid) 1	101.658
	CNS0095614	Golden flower (tetraploid) 2	88.921
	CNS0095615	Golden flower (tetraploid) 3	77.548
CRA001975	CRR073297	Stem 1	9.521
	CRR073298	Stem 2	6.503
	CRR073299	Stem 3	2.263
	CRR073300	Leaf 1	3.790
	CRR073301	Leaf 2	6.129
	CRR073302	Leaf 3	0.923
	CRR073303	Juvenile bud 1	0.712
	CRR073304	Juvenile bud 2	0.881
	CRR073305	Juvenile bud 3	1.964
	CRR073306	Third green 1	0.848
	CRR073307	Third green 2	0.911
	CRR073308	Third green 3	0.922
	CRR073309	Second white 1	5.087
	CRR073310	Second white 2	3.188
	CRR073311	Second white 3	1.291
	CRR073312	Silver flowering 1	3.710
	CRR073313	Silver flowering 2	8.502
	CRR073314	Silver flowering 3	5.265
	CRR073315	Gold flowering 1	16.831
	CRR073316	Gold flowering 2	16.679
	CRR073317	Gold flowering 3	6.941
	CRR073318	Tawny withering 1	5.873
	CRR073319	Tawny withering 2	6.099
	CRR073320	Tawny withering 3	1.719