Gene detail

Detail information of GWHGAAZE016962

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648140.1	0	PREDICTED: HBS1-like protein isoform X1 [Vitis vinifera]
Swissprot	tr\|P50256\|EF1AC_PORPU	5E-93	Elongation factor 1-alpha C
trEMBL	tr\|D7TU45\|D7TU45_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34018.3}
TAIR10	AT5G10630.1	0	Translation elongation factor EF1A/initiation factor IF2gamma family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	87860413	87868362	+
GWHAAZE00000004	mRNA	87860413	87868362	+
GWHAAZE00000004	exon	87860413	87860569	+
GWHAAZE00000004	exon	87861384	87861605	+
GWHAAZE00000004	exon	87861770	87861847	+
GWHAAZE00000004	exon	87863313	87863617	+
GWHAAZE00000004	exon	87864037	87864147	+
GWHAAZE00000004	exon	87864236	87864723	+
GWHAAZE00000004	exon	87865013	87865181	+
GWHAAZE00000004	exon	87866948	87867187	+
GWHAAZE00000004	exon	87867813	87867947	+
GWHAAZE00000004	exon	87868222	87868362	+
GWHAAZE00000004	CDS	87860413	87860569	+
GWHAAZE00000004	CDS	87861384	87861605	+
GWHAAZE00000004	CDS	87861770	87861847	+
GWHAAZE00000004	CDS	87863313	87863617	+
GWHAAZE00000004	CDS	87864037	87864147	+
GWHAAZE00000004	CDS	87864236	87864723	+
GWHAAZE00000004	CDS	87865013	87865181	+
GWHAAZE00000004	CDS	87866948	87867187	+
GWHAAZE00000004	CDS	87867813	87867947	+
GWHAAZE00000004	CDS	87868222	87868362	+

Transcript Sequence
>GWHTAAZE016982 AAAATACACGAGCCAAATCAGGAAACCATTAAACCTGGGGTTTGGCGTTGCCCCATTTGTACATTTGATAATGACGAGAGTATGTCTGCATGTGAAATATGTGGAGTTCTTCGAAACCCCTTGGTCAAAAGTTGTAGCAATAATAACATGAATGCGGCTGGTGGCAAATGCAAAGATTCTGGAGCATCCATGATGGCCAAGTCTCTTTTTGCATCATTGCCGCATCAGACACCCAAAAAGGCCGTAATCTTTCAACCACCAAATGATGTTTTTTTGACTCAAGAGGGCAATAACTTCCCCAAGCTTGGAAATATTCAAGGACATTTTCATGATTTGCATAAGGCTTTTAGCTCTCAAAACCATTACAAGGTTAATATAGCCCCTTTCAAGTTTGATGTTCCATCTCCGGATGATTTGGTATCAACTGGGTTGCAGTCTTCCAAAATAGGTTCAAAAGCCAATGCTAGCAAGCTATCATCTTCAGATGCCCCCTCAAGCAAGTTATCTTCTTCAGATGTCCCTTCAAGCAAGTTCTCATCTTCAGGTGTTCCCTCAAGCATAAGAGAGAGCAATATTAAAATAGAATCAAGTGCTGAAAATTCAACTACCTCTTCCAGTGATTTGAAAAATACGGCTTTGAATGTCAAAGCTCAAAACTCAAAGAATGTCAGTGGTGGAAGGGCCATATCACAGTATAAACCTGAGAAATGGATGCTACTTGATCATTTAGAAGATAGATTGGGCCAACTAAATCTTGCAATTGTTGGACATGTTGATTCCGGAAAGTCAACACTCTCAGGAAGGCTACTACACCTTTTGGGGCGGGTTTCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCTAAGCAACAAGGGAAGGGGTCCTTTGCTTATGCATGGGCATTAGATGAGAGTACCGAAGAAAGAGAAAGAGGAATAACAATGACAGTAGCTGTTGCTTATTTCAACTCCAAAAAACATCATGTTGTTCTGCTCGATTCCCCAGGTCATAAAGATTTTGTCCCAAATATGATATCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCGATAGGTTCGTTTGAAGCTGGTATGGACAGTACTGGAGGGCAAACAAGGGAACATGCACAACTTATTAGGAGTTTTGGGGTTGATCAAATTATAGTTGGTGTTAACAAAATGGATGTTGTAAATTATTCCAAGGAACGATTTCATACAATTAAACAACAACTTGGGACGTTTCTCCGCACCTGTGGCTTTAAGGATTCATCTGTGTCTTGGATTCCGTTAAGTGCCATGGAAAACCAGAACTTGGTGGTGGCTGCTTCTGATTCCCGATTATCATCCTGGTATCAGGGACCTTGTCTGTTGGATTCTATAGATTCTCTTCAACCTCCTGCAAGAGAATACTCGAAACCTCTATTAATGCCTATATGTGATGTTGTCAGAACGCAGTCACAGGGACAGGTCTCTGCGTGTGGGAAACTGGAAGCTGGTGCTCTTCGAGGTGGAACTAAGGTTGTAGTTATGCCAACTGGGGAGATAGGGATGGTGCGGTCCATGGAACGTGACTCTGAGCCATGTAGCATTGCAAGAGCCGGAGACAGTGTAGCTGTTAGTCTACAAGGCATTGACCCGAGCCGTGTGATGTCGGGTGGTGTCTTATGTCACCCCAGTTTTCCAGTTTCTGTTGCTAAGCACTTGGAACTTAAGGTTCTAGTCCTGGATGTCTCCCCCCCAATTCTAATCGGCTCTCAGTTGGAGTTTCACATACACCATGCAAAGGAAGCAGCAAGAGTTGTAAAGATATTGTCGTTGCTTGATCCCAAGACCGGAAAGGTCACAAAGAAGTCACCCCGCTGTCTACTCGCAAAGCAGAGCGCCGTAATTGAGGTGGTTCTGCAAGAGGCAGTTTGTGTGGAAGAGTTTTCGAGTAGTAGAGCACTTGGGAGGGTTTTCCTCAGATCATCTGGTAAAACTGTTGCTGTTGGTGTTGTTACCAAGATTATAATAGAGGCAGCGGCCCAGAAATAG

Network for GWHGAAZE016962

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	250	460	3.20E-44
PF03143.18	GTP_EFTU_D3	566	673	7.70E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14416	HBS1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.651
	SRR3591706	second leaf	12.146
	SRR3591707	mature leaf	14.326
	SRR3591708	Shoot apex	15.740
	SRR3591709	Stem	16.405
	SRR3591710	White floral bud	18.969
	SRR3591711	White flower	19.956
	SRR3591712	Green floral bud	19.924
	SRR3591713	Yellow flower	16.579
SRP173429	SRR8316895	Juvenile bud stage	13.667
	SRR8316896	Juvenile bud stage	16.053
	SRR8316897	Juvenile bud stage	7.499
	SRR8316894	Third green stage	6.661
	SRR8316900	Third green stage	19.662
	SRR8316901	Third green stage	17.964
	SRR8316898	Complete white stage	7.695
	SRR8316899	Complete white stage	25.738
	SRR8316903	Complete white stage	11.904
	SRR8316902	Silver flowering stage	9.152
	SRR8316904	Silver flowering stage	13.163
	SRR8316905	Silver flowering stage	6.818
	SRR8316906	Gold flowering stage	20.483
	SRR8316907	Gold flowering stage	16.963
	SRR8316908	Gold flowering stage	20.161
SRP132670	SRR6706286	Control	12.114
	SRR6706287	Light intensity 50%	12.823
	SRR6706288	Light intensity 20%	13.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.718
	CNS0095593	Slightly white alabastrum(diploid) 2	12.279
	CNS0095594	Slightly white alabastrum(diploid) 3	10.972
	CNS0095595	Whole white alabastrum(diploid) 2	10.740
	CNS0095596	Whole white alabastrum(diploid) 3	10.501
	CNS0095597	Whole white alabastrum(diploid) 4	10.022
	CNS0095598	Silvery flower (diploied) 1	15.827
	CNS0095599	Silvery flower (diploied) 2	14.529
	CNS0095600	Silvery flower (diploied) 3	19.278
	CNS0095601	Golden flower (diploid) 1	13.475
	CNS0095602	Golden flower (diploid) 2	18.066
	CNS0095603	Golden flower (diploid) 3	17.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.029
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.248
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.147
	CNS0095610	Silvery flower (tetraploid) 1	18.130
	CNS0095611	Silvery flower (tetraploid) 2	19.716
	CNS0095612	Silvery flower (tetraploid) 3	17.989
	CNS0095613	Golden flower (tetraploid) 1	10.182
	CNS0095614	Golden flower (tetraploid) 2	19.191
	CNS0095615	Golden flower (tetraploid) 3	20.371
CRA001975	CRR073297	Stem 1	16.774
	CRR073298	Stem 2	13.561
	CRR073299	Stem 3	12.201
	CRR073300	Leaf 1	15.912
	CRR073301	Leaf 2	14.508
	CRR073302	Leaf 3	10.065
	CRR073303	Juvenile bud 1	11.765
	CRR073304	Juvenile bud 2	7.857
	CRR073305	Juvenile bud 3	15.888
	CRR073306	Third green 1	3.758
	CRR073307	Third green 2	2.941
	CRR073308	Third green 3	4.854
	CRR073309	Second white 1	5.737
	CRR073310	Second white 2	7.432
	CRR073311	Second white 3	5.985
	CRR073312	Silver flowering 1	4.023
	CRR073313	Silver flowering 2	5.791
	CRR073314	Silver flowering 3	5.314
	CRR073315	Gold flowering 1	8.891
	CRR073316	Gold flowering 2	9.362
	CRR073317	Gold flowering 3	5.889
	CRR073318	Tawny withering 1	14.205
	CRR073319	Tawny withering 2	15.547
	CRR073320	Tawny withering 3	14.484