Gene detail

Detail information of GWHGAAZE016925

Functional Annotation

Database	Orthologs	Annotation
Nr	Q8L899.1BRI1_SOLPE	RecName: Full=Systemin receptor SR160; AltName: Full=Brassinosteroid LRR receptor kinase; Flags: Precursor [Solanum peruvianum]
Swissprot	tr\|Q8L899\|BRI1_SOLPE	Systemin receptor SR160 (Precursor)
trEMBL	tr\|A4LAP5\|A4LAP5_SOLPI	BRI1 protein {ECO:0000313\|EMBL:ABO27626.1}
TAIR10	AT4G39400.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	86196725	86199610	+
GWHAAZE00000004	mRNA	86196725	86199610	+
GWHAAZE00000004	exon	86196725	86197088	+
GWHAAZE00000004	exon	86197389	86199610	+
GWHAAZE00000004	CDS	86196725	86197088	+
GWHAAZE00000004	CDS	86197389	86199610	+

Transcript Sequence
>GWHTAAZE016945 TCTCGACAAGCTTCGCCCGCTTCCATTAATGGCGCCCAGAACCTCCTCTACTTCAAAGCCTCGTTACCCAACCCCAACGTCCTCCAAAACTGGTCACCATCCATTTCCCCCTGCAATTTCACCGGAATCTCATGTAAGGACTCCAAAATCACCTCAGTCGATCTCAGTTCAACTCGATTAAACCTCGATTTCCAACAAGTTTCACTCTATTTATTACCTCTCCCCAACTTGGAGAGACTCTCTCTAAAAAACTCCAATATCACCGGCAAAATCGCTCCGGCTGGTAGATCTCAATGCAGCGAGGTGCTGAGCTATATAGATCTGGCCGGCAACGGAATCTCCGGTCCGATCTCCGACCTCTCAATTGGGGGTTGTGGTAGCTTAAACTATCTTGATTTGTCGGCTAATAAGTTCTCCGGTGACGTCAAAGCTTCTCTCTCCGCTTGCCGGAGACTCAGCTACCTCAATCTTACACACAACCAGCTCTCCGGCGAGTTGCCGGAGTTTCCAATTGGAGTACTTCAGAGAGTTTATCTCTCCGGGAATGCGTTTTATGGGGGCATTCCTTTTAATCTCTCCGATTTGTGTTCCAGTCTGATTGAATTGGATTTGTCTCTGAATCATTTCTCCGGCGAGTTACCAGAGAGTTTGGGGGCTTGTACTTCTTTGCAGCTGCTTGATATCTCTAGCAACAATTTCTCCGGTGAGTTACCCATCGACACTCTATTGAAGATGAGTAGTTTAAAGACATTGGTGGTTCGGTTTAATAATTTTGTTGGTGAGTTGCCCAATTCGTTCTCGAAAATGACGAATTTGGAGATGTTAGATGTCAGTTCTAATAATATTACTGGTTTGATTCCGTCCGGGCTTTGTCAAGATCCAAGAAATAGCTTGAAGGTTTTGTATCTTCAGAACAATGGGTTCAATGGACCGATACCGGAGAGTTTAAGTAACTGTTCGAAGTTGGTTTCTCTTGATCTCAGCTTTAATTACCTCGTTGGGACCATCCCTTCAAGTTTAGGGTCATTGTCCAAGCTAAAGGATTTGATCATTTGGTTGAATCAGCTTCGTGGGGAAATCCCACGAGAGCTCATGTACATTCAAACTCTAGAGAATTTGATTCTTGATTTCAATGACTTGACTGGTTCGATCCCTGCTAGTTTGAGCAACTGTACTAATCTGAATTGGATTTCATTATCAAATAATCAGTTGACCGGCGGGATACCGGCTTCGTTTGGTGCTTTGGGTAATCTGGCCATTCTCAAGCTTGGTAACAACTCAATCTCCGGCGGCATTCCGCCGGAGCTCGGGGACTGCCGGAGCTTGATTTGGATGGATTTGAACACCAATTCCTTGAACGGATCTATTCCACCGGCTCTGTTCAAGCAATCGGGCAAGATAGCGGATGCATTGCTCACGGGGAAGAGTTATGTGTATATCAAGAACGATGGAAGCCAAGAGTGCCACGGAGCTGGGAATTTGCTTGAATTCGGAGGGATCAGGCAAGAGCAGTTGGACAGAATTTCGACGAGGCACCCCTGTAATTTCACTAGAGTTTACAGGGGAATCACTCAGCCTACGTTTAACCACAACGGGTCGATGATATTTCTCGATCTTTCCTACAACAAGTTGGATGGTAGTATTCCAAAGGAGCTTGGGTCAATGTACTATCTCTCCATTCTGAATTTGGGGCATAATGATCTAGCCGGTCCGATCCCTCAGGAGCTTGGAGGCTTAAAGAATGTGGCGATTCTTGATCTTTCGTACAATAGGCTCAATGGGTCCATCCCACAATCGATGACTAGCCTTACATTGCTCGGTGATGCTGATCTTTCCAACAACAATCTATCTGGTATGATCCCCGAATCTGCCCCTTTTGATACATTTCCAGATTATAGATTCTTGAATAATTCGGGCCTTTGTGGGTACCCTCTTCCTCGTTGTGGTGGTGATCCGAGTGCAAACTCAAATGGGCAACACCCAAAATCTCGCCGTAGACAAGCGTCCCTAGTGGGAAGCGTCACCCTTGGGTTGCTCTTTTCCCTATTTTGCATCTTTGGTTTCATCATAATTGCAGTCGAGACCAAGAAGAGGAGGAAGAAGAAAGATGCTGCCCTTGAAGCTTATATGGAAGGGCATTCACATTCGGGCACAGCCAATAATAGCGCATGGAAGCTAACCAGTGCTCGCGAAGCCTTAAGCATAAACCTGGCCACGTTCGAAAAGCCTCTTCGAAAGCTCACATTCGCTGATCTCCTTGAGGCCACCAATGGGTTCCACAACGACTCCCTCATTGGCTCCGGTGGCTTCGGTGACGTATATAGAGCACAGCTTAAGGATGGTAGTGTTGTAGCCATCAAGAAACTAATACACGTTAGCGGTCAAGGGGACCGGGAATTCATGGCCGAAATGGAAACCATTGGGAAAATCAAGCACCGGAACCTTGTCCCTCTCTTGGGGTATTGTAAAGTGGGCGAAGAACGGCTTTTGGTCTACGAGTACATGAAATTCGGAAGCTTAGACGACGTTTTGCACTCCCGAAAGAAGATCGGAACCAAGTTCAATTGGCCCGCCAGGCGAAAGGTT

Network for GWHGAAZE016925

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	13	45	1.10E-08
PF13855.7	LRR_8	103	162	1.20E-06
PF00560.34	LRR_1	297	319	1.9
PF13855.7	LRR_8	369	428	3.70E-07
PF07714.18	PK_Tyr_Ser-Thr	762	849	1.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13415	BRI1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.076
	SRR3591706	second leaf	5.442
	SRR3591707	mature leaf	3.650
	SRR3591708	Shoot apex	9.797
	SRR3591709	Stem	18.940
	SRR3591710	White floral bud	19.826
	SRR3591711	White flower	37.190
	SRR3591712	Green floral bud	19.311
	SRR3591713	Yellow flower	55.477
SRP173429	SRR8316895	Juvenile bud stage	7.858
	SRR8316896	Juvenile bud stage	7.375
	SRR8316897	Juvenile bud stage	2.611
	SRR8316894	Third green stage	5.192
	SRR8316900	Third green stage	11.028
	SRR8316901	Third green stage	12.182
	SRR8316898	Complete white stage	6.211
	SRR8316899	Complete white stage	28.128
	SRR8316903	Complete white stage	18.150
	SRR8316902	Silver flowering stage	20.596
	SRR8316904	Silver flowering stage	35.250
	SRR8316905	Silver flowering stage	19.582
	SRR8316906	Gold flowering stage	108.085
	SRR8316907	Gold flowering stage	72.874
	SRR8316908	Gold flowering stage	92.990
SRP132670	SRR6706286	Control	26.406
	SRR6706287	Light intensity 50%	28.116
	SRR6706288	Light intensity 20%	29.122
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.805
	CNS0095593	Slightly white alabastrum(diploid) 2	8.042
	CNS0095594	Slightly white alabastrum(diploid) 3	5.416
	CNS0095595	Whole white alabastrum(diploid) 2	6.890
	CNS0095596	Whole white alabastrum(diploid) 3	5.775
	CNS0095597	Whole white alabastrum(diploid) 4	7.226
	CNS0095598	Silvery flower (diploied) 1	11.472
	CNS0095599	Silvery flower (diploied) 2	8.572
	CNS0095600	Silvery flower (diploied) 3	42.472
	CNS0095601	Golden flower (diploid) 1	10.954
	CNS0095602	Golden flower (diploid) 2	64.835
	CNS0095603	Golden flower (diploid) 3	59.257
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.461
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.702
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.764
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.758
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.246
	CNS0095610	Silvery flower (tetraploid) 1	42.519
	CNS0095611	Silvery flower (tetraploid) 2	42.783
	CNS0095612	Silvery flower (tetraploid) 3	40.465
	CNS0095613	Golden flower (tetraploid) 1	30.734
	CNS0095614	Golden flower (tetraploid) 2	61.037
	CNS0095615	Golden flower (tetraploid) 3	61.245
CRA001975	CRR073297	Stem 1	21.984
	CRR073298	Stem 2	21.192
	CRR073299	Stem 3	20.845
	CRR073300	Leaf 1	28.080
	CRR073301	Leaf 2	24.673
	CRR073302	Leaf 3	21.333
	CRR073303	Juvenile bud 1	28.125
	CRR073304	Juvenile bud 2	19.129
	CRR073305	Juvenile bud 3	46.650
	CRR073306	Third green 1	9.446
	CRR073307	Third green 2	9.105
	CRR073308	Third green 3	11.229
	CRR073309	Second white 1	13.455
	CRR073310	Second white 2	11.185
	CRR073311	Second white 3	15.576
	CRR073312	Silver flowering 1	39.206
	CRR073313	Silver flowering 2	49.994
	CRR073314	Silver flowering 3	34.047
	CRR073315	Gold flowering 1	11.153
	CRR073316	Gold flowering 2	13.786
	CRR073317	Gold flowering 3	13.044
	CRR073318	Tawny withering 1	37.611
	CRR073319	Tawny withering 2	18.695
	CRR073320	Tawny withering 3	18.151