Gene detail

Detail information of GWHGAAZE016921

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004288088.1	0	PREDICTED: crossover junction endonuclease EME1B-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|C5H8J1\|EME1B_ARATH	3E-87	Crossover junction endonuclease EME1B
trEMBL	tr\|M5VYM1\|M5VYM1_PRUPE	7E-172	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06547.1}
TAIR10	AT2G22140.1	4E-77	essential meiotic endonuclease 1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	86093306	86110895	+
GWHAAZE00000004	mRNA	86093306	86110895	+
GWHAAZE00000004	exon	86093306	86093630	+
GWHAAZE00000004	exon	86095681	86095836	+
GWHAAZE00000004	exon	86095987	86096060	+
GWHAAZE00000004	exon	86102904	86103086	+
GWHAAZE00000004	exon	86103167	86103320	+
GWHAAZE00000004	exon	86103741	86103850	+
GWHAAZE00000004	exon	86104994	86105169	+
GWHAAZE00000004	exon	86106150	86106241	+
GWHAAZE00000004	exon	86106633	86106753	+
GWHAAZE00000004	exon	86107501	86107564	+
GWHAAZE00000004	exon	86107672	86107790	+
GWHAAZE00000004	exon	86108231	86108320	+
GWHAAZE00000004	exon	86109385	86109499	+
GWHAAZE00000004	exon	86110692	86110895	+
GWHAAZE00000004	CDS	86093306	86093630	+
GWHAAZE00000004	CDS	86095681	86095836	+
GWHAAZE00000004	CDS	86095987	86096060	+
GWHAAZE00000004	CDS	86102904	86103086	+
GWHAAZE00000004	CDS	86103167	86103320	+
GWHAAZE00000004	CDS	86103741	86103850	+
GWHAAZE00000004	CDS	86104994	86105169	+
GWHAAZE00000004	CDS	86106150	86106241	+
GWHAAZE00000004	CDS	86106633	86106753	+
GWHAAZE00000004	CDS	86107501	86107564	+
GWHAAZE00000004	CDS	86107672	86107790	+
GWHAAZE00000004	CDS	86108231	86108320	+
GWHAAZE00000004	CDS	86109385	86109499	+
GWHAAZE00000004	CDS	86110692	86110895	+

Transcript Sequence
>GWHTAAZE016941 ATGGCTCAATCAATTGCAGTGGACATACTCTCCGACGACGATGACGAACATCCCTACGACGACGTTTCAACTCCACTCCAACCCCAATCGAAGAGGCCGAAATCATATTTCAATCCAAGCCCTAACCCTACTACTGTTTTCCTCATCGACGACGATCCTACGCCTCTCAAGCCGCCTCCGGGTCCCACCACCTCCACGCCGTCGGTCGTCGCCGAAACTCCGATGTCCGATTTCTCGAAATCAAGCGTTTCATTCGTCAAATGCAACTCTCGTGTTACCGATCCCCAGCTTAGGGTTTCTTCAACGCCTGATCCTAAACCTTTTGGAATCAGTGGATTGATATGTTTGGAGTCTGATAATGAGTCTGAAAGGGGTTCTGCAAGCAAAGTGTGGAAGCAAAATGAATCTGCATTTGTTGGTTGTGAACTGGCAAAGGATTCAAAATTGGGTTCTAGATTTGTTGATTCCCCATTTCATCTTGGGCATGCTAATATGATAGAAACATTTGGGCACGGTTCTTTGCATCCAATTTTGTCAGAAGATGACCTCGCTGAGGTGCAGGATCATCCTGATGAAGAAACTGACAGGTCGCAACCCGTGGGCAATGCGGTGAGACTGAATGGTAAAAGTAAAGATAAAGCAAATAATAAAAGGAACTTGGATGATGCAACAGGCAAAAAGAGGTTAACTAAGGAAGAAAGAATTCATTTAATGGAAGAAAAGAAAAGGCAGAAAGAACAAGAGAAGTTGCAAAAGGCAGCTCTTAAGGCTGAAGCTGCAGAGATGAAAAAACTGCAGAAAGAAAAACAAAAGTGGGAAAAAGGAAAATTTGCTCTAAAATCCATTGTGGCTGAAATTGACAAAAAAGTCGTTGAACTAGGATCTGTCGGAGGACATCTGCTTACAAGGTTAGCAGAGAAAGGTGTTACATACCGTATAACATCAAATCCAATTGAAAGATCTATTGTGTGGACTATGACTGTCCCAGAACAAATTTCACAGCTCTCATCGGGAGGATTTGAGATTCCATATGTGTTAATTGTGTATGAGGCCGACGAGTTCTGTAACCTTGTGATGGATGAGTCCCTCATGGATCATACATCCCGTATTCAAAGCCGTTATCCATCTTATACAGTTTGCTACCTCACAAATAGGCTTATGGCATATATCAATAAAAGTGCGGCTACTGCTGTTTTTACCACTTTATTGGACTTCGTGGACTCTTCGGGTTACACTATCCTTTTTGTTGTCCATCCATTCATCATGCGTGAGAGAGAAAAGGATGGAGGTTCCCAGTTGTGTGTGCGTGGTGGATGGGCGGCGACTATGGTTTCAGGCAGGGGAGGCGTGCTCTCCAGGGTCGTAGGGGAGGAGGCATGGCCCTGCCAGAGGGAACAAGGACAGTACAAGGACCCGGCCAGTTATAGTGGTTGGAGGCGCCCACCTGTTGAGGAGATGCTGTCAAAATTAACAACTCATTTTTTTAGAGTACATTCAAGGCAGTGTATTGATGAGGCTGAATTAGCTGAACATGTTGTTGGTCTGACTTGCAGCCTGGCATCTTGTCAATTTAGAAAAAGGTTAACTCGACTGTCTGTAAATGCTAACGGATCCCTCATCCCCAAGGATTGTTTTGACAAGACTTTAATAAAAAAGAACTTGTGGTTAAAAGCGTTGATAGCCATACCGAAGGTACAACCACGATTTGCTCTTGCCATATGGAAGAAATATCCAACAATGAAATCCCTTTTGACTGTTTACATGGATCCAAGTAAATCTGTGCATGAGAAAGAATTTCTACTGAAGGACTTGACGACGGAAGGGATAGTTGGGGAAGATAGAAGATTAGGAGAGGTTTGTTCAAAGAGAGTCTACAGAATATTAATGGCTAAACACGGAAGCATCAAAACCGACGATGTTGAAGATGGAGCCGATTTATTCAGCCCTCAATCTTCCGGAAAATTTTCTTCTAAATTTATTTGA

Network for GWHGAAZE016921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02732.16	ERCC4	286	392	4.50E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10882	EME1, MMS4	Homologous recombination	map03440
K10882	EME1, MMS4	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0004518	molecular_function	nuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.085
	SRR3591706	second leaf	0.434
	SRR3591707	mature leaf	0.449
	SRR3591708	Shoot apex	6.389
	SRR3591709	Stem	4.073
	SRR3591710	White floral bud	2.366
	SRR3591711	White flower	3.282
	SRR3591712	Green floral bud	2.235
	SRR3591713	Yellow flower	1.761
SRP173429	SRR8316895	Juvenile bud stage	2.284
	SRR8316896	Juvenile bud stage	4.286
	SRR8316897	Juvenile bud stage	1.348
	SRR8316894	Third green stage	1.043
	SRR8316900	Third green stage	2.954
	SRR8316901	Third green stage	2.658
	SRR8316898	Complete white stage	0.663
	SRR8316899	Complete white stage	2.410
	SRR8316903	Complete white stage	1.135
	SRR8316902	Silver flowering stage	0.769
	SRR8316904	Silver flowering stage	0.841
	SRR8316905	Silver flowering stage	0.368
	SRR8316906	Gold flowering stage	0.888
	SRR8316907	Gold flowering stage	1.077
	SRR8316908	Gold flowering stage	1.000
SRP132670	SRR6706286	Control	2.735
	SRR6706287	Light intensity 50%	2.207
	SRR6706288	Light intensity 20%	2.135
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.992
	CNS0095593	Slightly white alabastrum(diploid) 2	2.898
	CNS0095594	Slightly white alabastrum(diploid) 3	3.212
	CNS0095595	Whole white alabastrum(diploid) 2	1.584
	CNS0095596	Whole white alabastrum(diploid) 3	1.917
	CNS0095597	Whole white alabastrum(diploid) 4	1.819
	CNS0095598	Silvery flower (diploied) 1	2.301
	CNS0095599	Silvery flower (diploied) 2	1.521
	CNS0095600	Silvery flower (diploied) 3	1.375
	CNS0095601	Golden flower (diploid) 1	1.809
	CNS0095602	Golden flower (diploid) 2	1.046
	CNS0095603	Golden flower (diploid) 3	1.282
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.839
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.087
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.550
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.869
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.447
	CNS0095610	Silvery flower (tetraploid) 1	1.333
	CNS0095611	Silvery flower (tetraploid) 2	2.160
	CNS0095612	Silvery flower (tetraploid) 3	1.543
	CNS0095613	Golden flower (tetraploid) 1	1.316
	CNS0095614	Golden flower (tetraploid) 2	1.421
	CNS0095615	Golden flower (tetraploid) 3	0.552
CRA001975	CRR073297	Stem 1	2.068
	CRR073298	Stem 2	2.941
	CRR073299	Stem 3	2.330
	CRR073300	Leaf 1	1.450
	CRR073301	Leaf 2	1.135
	CRR073302	Leaf 3	0.597
	CRR073303	Juvenile bud 1	1.492
	CRR073304	Juvenile bud 2	0.396
	CRR073305	Juvenile bud 3	1.585
	CRR073306	Third green 1	0.063
	CRR073307	Third green 2	0.240
	CRR073308	Third green 3	0.250
	CRR073309	Second white 1	0.084
	CRR073310	Second white 2	0.478
	CRR073311	Second white 3	0.498
	CRR073312	Silver flowering 1	0.502
	CRR073313	Silver flowering 2	0.256
	CRR073314	Silver flowering 3	0.518
	CRR073315	Gold flowering 1	0.790
	CRR073316	Gold flowering 2	0.901
	CRR073317	Gold flowering 3	0.276
	CRR073318	Tawny withering 1	2.961
	CRR073319	Tawny withering 2	2.543
	CRR073320	Tawny withering 3	2.352