Gene detail

Detail information of GWHGAAZE016920

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002532774.1	6.0691E-139	ubiquitin-specific protease, putative [Ricinus communis]
Swissprot	tr\|Q9FPS0\|UBP27_ARATH	3E-109	Ubiquitin carboxyl-terminal hydrolase 27
trEMBL	tr\|B9T3F5\|B9T3F5_RICCO	2E-139	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435} (Fragment)
TAIR10	AT4G39370.1	2E-88	ubiquitin-specific protease 27

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	86025046	86034088	+
GWHAAZE00000004	mRNA	86025046	86034088	+
GWHAAZE00000004	exon	86025046	86025378	+
GWHAAZE00000004	exon	86025864	86025990	+
GWHAAZE00000004	exon	86028015	86028115	+
GWHAAZE00000004	exon	86028517	86028758	+
GWHAAZE00000004	exon	86029661	86029700	+
GWHAAZE00000004	exon	86029817	86030037	+
GWHAAZE00000004	exon	86030444	86030579	+
GWHAAZE00000004	exon	86031258	86031320	+
GWHAAZE00000004	exon	86033798	86034088	+
GWHAAZE00000004	CDS	86025046	86025378	+
GWHAAZE00000004	CDS	86025864	86025990	+
GWHAAZE00000004	CDS	86028015	86028115	+
GWHAAZE00000004	CDS	86028517	86028758	+
GWHAAZE00000004	CDS	86029661	86029700	+
GWHAAZE00000004	CDS	86029817	86030037	+
GWHAAZE00000004	CDS	86030444	86030579	+
GWHAAZE00000004	CDS	86031258	86031320	+
GWHAAZE00000004	CDS	86033798	86034088	+

Transcript Sequence
>GWHTAAZE016940 ATGGTAAAAATCCAAGGAGACATAAGCCTTCATTCACTAATTCACCAATTCAAGCATGGGTTTGCTGCGATTTCATCAAACTCCCAATGGGTTTCGGCCTCTGGGTTTAATCTATCAGTTGCTAGTCTACTGGGTGTTGCTGGTTTGTTCTTTGCTCTAAGAGAAGGTAATATAAAAAATCTTGCTACCTTAACTTGGTCTTCTTCAGATACAAGAGATACTCTTTCAGACAAGTTTCGGTTAGTACCCGGATTGCAAAATCTCGGCAACAATTGTTTCTTGAATGTTATTTTGCAGGTAATCGTCAATTTTTCTCCGTTTGATATTTTGTTGGCTCTGGCTAGCTGTTCATGTTTTCCAAGTTTCCTTCAAAATATGTTGGAGGAATTTGAGTATTTGTCCGTTGAGGAACGAGTTGAAAGCATGCCACTTGCAGTTTCCTTGGAAACTCTATTGCAAGAGTTGCGTACACTCCGACATGGAAGGGAGGTACTGAGTCCACGGAGAGTGATGCTTGCAATCGATCATTACATTCATAATTTCAATCTAACCTGCCAACAGGATGCAGAAGAAGCATTTTTTCACATTTTGTCTTCCTTAAGAGAAGAATTATCAGAATGTTTTGTCCCAAATCAGAACTCCCTAGGAGATGTGAGTACCTTGGCTAATTGTAGGATTATTACTTTAGAGAGGAGGGCAGCTCAAAGTGAGCACGAAAGATGGCAGAGAAGTTTTCTTGGTCCTTTTGATGGGATTCTTGGCAGCATTTTGACTTGTCAAAGTTGTTCGTTTCAGGTGGCATGCTTGCACCTTTCACCTGTGCTCAGTGGTGGTTGTACCATTATGGCTGGATGCTCTGTGGAGGATTGCTTGAAGCAGTTTTGTGCTGCAGAACTACTTGAAAATTACCGCTGCAGTAACTGTTGGCATATTGCTGCAATTAAGTTCTTATCTTTGATAGAGGGGAATGAGGTAATTTTTTCATACAAAATTTTAGTTTCCTTAATGTGCAACTTGAGCTTACTCAGCAAAACTAACTTAGGGTTCCAAATCCAAAATCGGAGACAGATATTGAAGAACTTAAGAATTGTAGCAAGCAAGATTCTTGTGACTGCAAAAATCTCTCGCCTTGGATCACTACCATGGTCTAATGGTTTTTCTCACACTTTCAAGGAACTACATATTGCTCGCAGTCCAAAGATTTTATGCCTTCACATACAACGTGCTTCGGTGAATGTGTTTGGAGACCTGGTGAAGCTGCAGGTAGGTGGGACCTGCCGGACCGCCCCTTCAGAAGATCATATGTATCGTCTAGTTTCCGTTGTGCAGCACTTTGGAAGAGCCGGAAGTGGGCACTACATGGTTTACAGAAGAGCCAGAGCTGAAGCAAACCCTAATGGATCATCTTCTCATTGGTTTTGCATTTCGGATTCTGATGTTTACAGAGTTGCCGAGAAAGACGTTCTTGCCGCAGAGGCCAGCTTGCTTTTCTATGAGAAAATTTCCAAACACCGAGAAAATTGTTCCTCTCTACCTGTAAGTGATGGTTCTTGA

Network for GWHGAAZE016920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	84	498	4.80E-34

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K11851	USP30	Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.650
	SRR3591706	second leaf	8.560
	SRR3591707	mature leaf	9.836
	SRR3591708	Shoot apex	10.782
	SRR3591709	Stem	13.875
	SRR3591710	White floral bud	6.713
	SRR3591711	White flower	9.987
	SRR3591712	Green floral bud	10.168
	SRR3591713	Yellow flower	5.483
SRP173429	SRR8316895	Juvenile bud stage	9.081
	SRR8316896	Juvenile bud stage	10.811
	SRR8316897	Juvenile bud stage	6.380
	SRR8316894	Third green stage	4.459
	SRR8316900	Third green stage	11.696
	SRR8316901	Third green stage	9.696
	SRR8316898	Complete white stage	5.222
	SRR8316899	Complete white stage	15.617
	SRR8316903	Complete white stage	7.042
	SRR8316902	Silver flowering stage	5.224
	SRR8316904	Silver flowering stage	8.607
	SRR8316905	Silver flowering stage	4.119
	SRR8316906	Gold flowering stage	13.816
	SRR8316907	Gold flowering stage	12.898
	SRR8316908	Gold flowering stage	17.438
SRP132670	SRR6706286	Control	8.979
	SRR6706287	Light intensity 50%	8.342
	SRR6706288	Light intensity 20%	9.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.049
	CNS0095593	Slightly white alabastrum(diploid) 2	6.737
	CNS0095594	Slightly white alabastrum(diploid) 3	5.363
	CNS0095595	Whole white alabastrum(diploid) 2	6.064
	CNS0095596	Whole white alabastrum(diploid) 3	5.112
	CNS0095597	Whole white alabastrum(diploid) 4	7.079
	CNS0095598	Silvery flower (diploied) 1	12.943
	CNS0095599	Silvery flower (diploied) 2	7.287
	CNS0095600	Silvery flower (diploied) 3	8.467
	CNS0095601	Golden flower (diploid) 1	10.501
	CNS0095602	Golden flower (diploid) 2	9.848
	CNS0095603	Golden flower (diploid) 3	9.296
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.773
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.771
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.914
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.062
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.295
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.536
	CNS0095610	Silvery flower (tetraploid) 1	10.845
	CNS0095611	Silvery flower (tetraploid) 2	12.239
	CNS0095612	Silvery flower (tetraploid) 3	11.215
	CNS0095613	Golden flower (tetraploid) 1	6.251
	CNS0095614	Golden flower (tetraploid) 2	9.526
	CNS0095615	Golden flower (tetraploid) 3	9.833
CRA001975	CRR073297	Stem 1	7.186
	CRR073298	Stem 2	7.336
	CRR073299	Stem 3	4.823
	CRR073300	Leaf 1	6.056
	CRR073301	Leaf 2	6.249
	CRR073302	Leaf 3	3.635
	CRR073303	Juvenile bud 1	4.126
	CRR073304	Juvenile bud 2	2.229
	CRR073305	Juvenile bud 3	4.089
	CRR073306	Third green 1	1.723
	CRR073307	Third green 2	0.765
	CRR073308	Third green 3	1.264
	CRR073309	Second white 1	1.617
	CRR073310	Second white 2	2.872
	CRR073311	Second white 3	2.672
	CRR073312	Silver flowering 1	1.919
	CRR073313	Silver flowering 2	2.204
	CRR073314	Silver flowering 3	1.766
	CRR073315	Gold flowering 1	3.573
	CRR073316	Gold flowering 2	6.250
	CRR073317	Gold flowering 3	2.985
	CRR073318	Tawny withering 1	4.337
	CRR073319	Tawny withering 2	5.595
	CRR073320	Tawny withering 3	4.670