Detail information of GWHGAAZE016919


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011025554.10PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
Swissprottr|Q9FIB6|PS12A_ARATH026S proteasome non-ATPase regulatory subunit 12 homolog A
trEMBLtr|F6H4C4|F6H4C4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47135.1}
TAIR10AT5G09900.2026S proteasome regulatory subunit, putative (RPN5)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8594505885952836-
GWHAAZE00000004mRNA8594505885952836-
GWHAAZE00000004exon8595271085952836-
GWHAAZE00000004exon8595238685952614-
GWHAAZE00000004exon8595055485950661-
GWHAAZE00000004exon8595034285950446-
GWHAAZE00000004exon8595016785950223-
GWHAAZE00000004exon8594985885950054-
GWHAAZE00000004exon8594786685947965-
GWHAAZE00000004exon8594745185947563-
GWHAAZE00000004exon8594632585946466-
GWHAAZE00000004exon8594613085946207-
GWHAAZE00000004exon8594505885945276-
GWHAAZE00000004five_prime_UTR8595271085952836-
GWHAAZE00000004five_prime_UTR8595252485952614-
GWHAAZE00000004CDS8595238685952523-
GWHAAZE00000004CDS8595055485950661-
GWHAAZE00000004CDS8595034285950446-
GWHAAZE00000004CDS8595016785950223-
GWHAAZE00000004CDS8594985885950054-
GWHAAZE00000004CDS8594786685947965-
GWHAAZE00000004CDS8594745185947563-
GWHAAZE00000004CDS8594632585946466-
GWHAAZE00000004CDS8594613085946207-
GWHAAZE00000004CDS8594505885945276-
Transcript Sequence

Network for GWHGAAZE016919

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01399.28PCI2713754.60E-15
PF18098.2RPN5_C3814134.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03035PSMD12, RPN5 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf91.028
SRR3591706second leaf42.230
SRR3591707mature leaf21.126
SRR3591708Shoot apex60.244
SRR3591709Stem55.270
SRR3591710White floral bud60.545
SRR3591711White flower69.911
SRR3591712Green floral bud81.604
SRR3591713Yellow flower46.396
SRP173429 SRR8316895Juvenile bud stage 64.983
SRR8316896Juvenile bud stage 87.497
SRR8316897Juvenile bud stage 44.937
SRR8316894Third green stage 39.872
SRR8316900Third green stage 119.217
SRR8316901Third green stage 96.182
SRR8316898Complete white stage 35.500
SRR8316899Complete white stage 103.000
SRR8316903Complete white stage 50.793
SRR8316902Silver flowering stage28.850
SRR8316904Silver flowering stage38.765
SRR8316905Silver flowering stage16.633
SRR8316906Gold flowering stage 55.102
SRR8316907Gold flowering stage 64.721
SRR8316908Gold flowering stage 68.945
SRP132670SRR6706286Control78.822
SRR6706287Light intensity 50%82.303
SRR6706288Light intensity 20%90.023
CNP0000432CNS0095592Slightly white alabastrum(diploid) 157.752
CNS0095593Slightly white alabastrum(diploid) 264.773
CNS0095594Slightly white alabastrum(diploid) 356.652
CNS0095595Whole white alabastrum(diploid) 250.315
CNS0095596Whole white alabastrum(diploid) 355.139
CNS0095597Whole white alabastrum(diploid) 441.700
CNS0095598Silvery flower (diploied) 140.744
CNS0095599Silvery flower (diploied) 239.588
CNS0095600Silvery flower (diploied) 365.464
CNS0095601Golden flower (diploid) 132.747
CNS0095602Golden flower (diploid) 256.098
CNS0095603Golden flower (diploid) 357.025
CNS0095604Slightly white alabastrum(tetraploid) 166.314
CNS0095605Slightly white alabastrum(tetraploid) 253.557
CNS0095606Slightly white alabastrum(tetraploid) 3102.292
CNS0095607Whole white alabastrum(tetraploid) 136.362
CNS0095608Whole white alabastrum(tetraploid) 237.283
CNS0095609Whole white alabastrum(tetraploid) 386.558
CNS0095610Silvery flower (tetraploid) 163.760
CNS0095611Silvery flower (tetraploid) 254.131
CNS0095612Silvery flower (tetraploid) 350.612
CNS0095613Golden flower (tetraploid) 130.843
CNS0095614Golden flower (tetraploid) 249.473
CNS0095615Golden flower (tetraploid) 342.700
CRA001975CRR073297Stem 177.251
CRR073298Stem 278.391
CRR073299Stem 380.340
CRR073300Leaf 177.790
CRR073301Leaf 282.004
CRR073302Leaf 391.803
CRR073303Juvenile bud 166.892
CRR073304Juvenile bud 268.354
CRR073305Juvenile bud 356.287
CRR073306Third green 127.448
CRR073307Third green 225.759
CRR073308Third green 327.119
CRR073309Second white 127.500
CRR073310Second white 233.228
CRR073311Second white 324.972
CRR073312Silver flowering 117.420
CRR073313Silver flowering 214.780
CRR073314Silver flowering 318.534
CRR073315Gold flowering 127.418
CRR073316Gold flowering 239.890
CRR073317Gold flowering 326.128
CRR073318Tawny withering 166.503
CRR073319Tawny withering 251.839
CRR073320Tawny withering 369.110